RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 VPS37BQ9H9H4 285 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 MAGEE1Q9HCI5 957 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TUFT1Q9NNX1 390 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 PFDN4Q9NQP4 134 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 C8orf4Q9NR00 106 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CHST7Q9NS84 486 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SEPT11Q9NVA2 429 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 TAS2R14Q9NYV8 317 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 TMEM9Q9P0T7 183 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SIRPGQ9P1W8 387 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 PPARGC1AQ9UBK2 798 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 APOBEC2Q9Y235 224 aaKnown RBP6.93□□□□□ -1.3
USP28-207ENST00000538475 RABGAP1Q9Y3P9 1069 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SNCAIPQ9Y6H5 919 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 IKBKGQ9Y6K9 419 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 SLC30A1Q9Y6M5 507 aa6.93□□□□□ -1.3
USP28-207ENST00000538475 CCDC160A6NGH7 325 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TRIM64BA6NI03 449 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SDR42E2A6NKP2 422 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 RSPH10B2B2RC85 870 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SNNO75324 88 aaPredicted RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 KRT37O76014 449 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 WISP1O95388 367 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PARNO95453 639 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 ENO1P06733 434 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 SPATA31D3P0C874 917 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 RSPH10BP0C881 870 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 FGFR1P11362 822 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 CNTFP26441 200 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PMLP29590 882 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 ECE1P42892 770 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 CASP4P49662 377 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TMED10P49755 219 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 COPAP53621 1224 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 AQP4P55087 323 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PFKPQ01813 784 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 MECOMQ03112 1051 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 C19orf57Q0VDD7 668 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 STX3Q13277 289 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TRIP10Q15642 601 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 FSCBQ5H9T9 825 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PRSS36Q5K4E3 855 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 GPATCH4Q5T3I0 446 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 RNASEH2BQ5TBB1 312 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 LIN9Q5TKA1 542 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 IL23RQ5VWK5 629 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PEAR1Q5VY43 1037 aaPredicted RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 CYP4F22Q6NT55 531 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 AADACL2Q6P093 401 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TMEM53Q6P2H8 277 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SPATA31D4Q6ZUB0 917 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SH2D5Q6ZV89 423 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 C16orf86Q6ZW13 317 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 GSTA5Q7RTV2 222 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PRPF39Q86UA1 669 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 ZNF354CQ86Y25 554 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 PPIL6Q8IXY8 311 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 C4orf33Q8N1A6 199 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 FBXW8Q8N3Y1 598 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 DCAKDQ8WVC6 231 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 E2F7Q96AV8 911 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 DCUN1D1Q96GG9 259 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 ZMAT2Q96NC0 199 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 RTKNQ9BST9 563 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 HGH1Q9BTY7 390 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 OSBPL11Q9BXB4 747 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 MRPL1Q9BYD6 325 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 YTHDF1Q9BYJ9 559 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 CEP41Q9BYV8 373 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SLC2A11Q9BYW1 496 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 NMUR2Q9GZQ4 415 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TMEM206Q9H813 350 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 C10orf88Q9H8K7 445 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 ATAD3AQ9NVI7 634 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 THAP1Q9NVV9 213 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 DDX56Q9NY93 547 aaKnown RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 TMOD3Q9NYL9 352 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 TBC1D7Q9P0N9 293 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 KIAA1522Q9P206 1035 aaPredicted RBP6.92□□□□□ -1.3
USP28-207ENST00000538475 HESX1Q9UBX0 185 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 COQ6Q9Y2Z9 468 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 COQ4Q9Y3A0 265 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 AP4S1Q9Y587 144 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SCINQ9Y6U3 715 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 ROBO1Q9Y6N7 1651 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 SF3B1O75533 1304 aaKnown RBP eCLIP6.92□□□□□ -1.38e-6■■■■■ 107
USP28-207ENST00000538475 FER1L6Q2WGJ9 1857 aa6.92□□□□□ -1.3
USP28-207ENST00000538475 A0A1W2PPM1 405 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FUOMA2VDF0 154 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FBP2O00757 339 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 COPEO14579 308 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 LIASO43766 372 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CPNE3O75131 537 aaKnown RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 OR6B1O95007 311 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 GCNT3O95395 438 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CRTAMO95727 393 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ALOX5P09917 674 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 POLR2MP0CAP2 368 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SRGAP2CP0DJJ0 459 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SRGAP2BP0DMP2 458 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms