RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RBM41Q96IZ5 413 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 RPS6KC1Q96S38 1066 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 TIPINQ9BVW5 301 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 TRIM31Q9BZY9 425 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 GLT8D2Q9H1C3 349 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 WNT8AQ9H1J5 351 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 NEUROG2Q9H2A3 272 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 GANQ9H2C0 597 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 CDIP1Q9H305 208 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 EPB41L4BQ9H329 900 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 POLD4Q9HCU8 107 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 FGFR1OP2Q9NVK5 253 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 FBLN5Q9UBX5 448 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ZNF212Q9UDV6 495 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 SRPK3Q9UPE1 567 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 AGAP1Q9UPQ3 857 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 SMG5Q9UPR3 1016 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 APOBEC2Q9Y235 224 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 SIT1Q9Y3P8 196 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 GMEB1Q9Y692 573 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 COMMD3-BMI1R4GMX3 469 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 hCG_1642624A0A1W2PR95 340 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 MYMKA6NI61 221 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SMIM23A6NLE4 172 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 PP2D1A8MPX8 630 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ZNF561-AS1K7EIQ3 104 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SCDO00767 359 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TLR2O60603 784 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 CDH16O75309 829 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 RAD17O75943 681 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 NOL4O94818 638 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 F2P00734 622 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TPBGLP0DKB5 382 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 BRAFP15056 766 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 UCHL3P15374 230 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 DESP17661 470 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TNFAIP3P21580 790 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SP100P23497 879 aaPredicted RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 PTPN4P29074 926 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 MAGEA8P43361 318 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 CLCN2P51788 898 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 POLE2P56282 527 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 PRR5P85299 388 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 POU5F1Q01860 360 aaKnown RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 CETN1Q12798 172 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TUSC3Q13454 348 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SPARCL1Q14515 664 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TRADDQ15628 312 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SEPT7Q16181 437 aaKnown RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 PLEKHN1Q494U1 663 aaPredicted RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 FKBP1CQ5VVH2 108 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 BTBD8Q5XKL5 378 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ANO7Q6IWH7 933 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 IRF2BP2Q7Z5L9 587 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ADGRA1Q86SQ6 560 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 LONP2Q86WA8 852 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 CCDC105Q8IYK2 499 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 NXPE1Q8N323 547 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 Q8N3U1 123 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ERMNQ8TAM6 284 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ATP8B4Q8TF62 1192 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 U2AF1L4Q8WU68 220 aaKnown RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 ART4Q93070 314 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TSPAN17Q96FV3 270 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 TTC25Q96NG3 672 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ORAI3Q9BRQ5 295 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 CD244Q9BZW8 370 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 MMADHCQ9H3L0 296 aaPredicted RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 SYNCQ9H7C4 482 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ZWILCHQ9H900 591 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 NGRNQ9NPE2 291 aaKnown RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 DCP1AQ9NPI6 582 aaPredicted RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 THG1LQ9NWX6 298 aaKnown RBP6.9□□□□□ -1.3
USP28-202ENST00000535607 TMOD2Q9NZR1 351 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 DLGAP2Q9P1A6 1054 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ATXN10Q9UBB4 475 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 LNPEPQ9UIQ6 1025 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 JAG2Q9Y219 1238 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 SSX2IPQ9Y2D8 614 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP28-202ENST00000535607 ADGRA3Q8IWK6 1321 aa6.9□□□□□ -1.3
USP28-202ENST00000535607 ATRNL1Q5VV63 1379 aa6.9□□□□□ -1.31
USP28-202ENST00000535607 WDR90Q96KV7 1748 aa6.9□□□□□ -1.31
USP28-202ENST00000535607 SCN4AP35499 1836 aa6.9□□□□□ -1.31
USP28-202ENST00000535607 SMCO2A6NFE2 343 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 PRAMEF25A6NGN4 478 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 FAM47DPA6NHR8 397 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 MAGEB2O15479 319 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 THAP12O43422 761 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 CIB2O75838 187 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 RNF8O76064 485 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 SHBGP04278 402 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 PDHA1P08559 390 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 CTNNA2P26232 953 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 CETN2P41208 172 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 TXKP42681 527 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 RANBP1P43487 201 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 PTDSS1P48651 473 aaKnown RBP6.89□□□□□ -1.31
USP28-202ENST00000535607 PRELPP51888 382 aa6.89□□□□□ -1.31
USP28-202ENST00000535607 INHBEP58166 350 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms