RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ALDH18A1P54886 795 aaKnown RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 YPEL5P62699 121 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 CFHR1Q03591 330 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 MTA1Q13330 715 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 RBMS2Q15434 407 aaKnown RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 TWIST1Q15672 202 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 SLC35G1Q2M3R5 365 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 ARHGAP15Q53QZ3 475 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 FAM90A2PQ658T7 463 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 C1orf228Q6PIY5 440 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 KIAA0408Q6ZU52 694 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 SRLQ86TD4 932 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 PIM3Q86V86 326 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 GATAD2AQ86YP4 633 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 ZNF366Q8N895 744 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 SRFBP1Q8NEF9 429 aaKnown RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 DEPTORQ8TB45 409 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 MORC4Q8TE76 937 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 PARD3BQ8TEW8 1205 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 GLMPQ8WWB7 406 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 COQ8BQ96D53 544 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 TTLL2Q9BWV7 592 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 NAA15Q9BXJ9 866 aaKnown RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 ZNF700Q9H0M5 742 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 LRCH1Q9Y2L9 728 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 AFG3L2Q9Y4W6 797 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 HS3ST3B1Q9Y662 390 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 PNMA6EA0A0J9YXQ4 647 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 DPPA5A6NC42 116 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ADAM10O14672 748 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 TLR2O60603 784 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 CBFA2T3O75081 653 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 TULP3O75386 442 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ENO1P06733 434 aaKnown RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 AKR1A1P14550 325 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 NDUFS1P28331 727 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 HOXD12P35452 270 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 NR4A2P43354 598 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 HSPA7P48741 367 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 SEC23BQ15437 767 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ELF2Q15723 593 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ANXA2RQ3ZCQ2 193 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 RAP1GAP2Q684P5 730 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ACSM6Q6P461 480 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 RBM44Q6ZP01 1051 aaKnown RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 RINLQ6ZS11 566 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 FAM57BQ71RH2 274 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 SYTL1Q8IYJ3 562 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ADGRF4Q8IZF3 695 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ARFGAP1Q8N6T3 406 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 FAM47BQ8NA70 645 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 SVIPQ8NHG7 77 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 MUL1Q969V5 352 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 KAZALD1Q96I82 304 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 ZNF48Q96MX3 618 aaPredicted RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 SPRTNQ9H040 489 aaPredicted RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 CDCP1Q9H5V8 836 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 MYH16Q9H6N6 1097 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 PRDM16Q9HAZ2 1276 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 PAPOLBQ9NRJ5 636 aaKnown RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 TMEM45AQ9NWC5 275 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 SEMA5BQ9P283 1151 aa3.2□□□□□ -1.9
CD44-238ENST00000534296 MAGED2Q9UNF1 606 aaPredicted RBP3.2□□□□□ -1.9
CD44-238ENST00000534296 EMSYQ7Z589 1322 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 CCDC187A0A096LP49 1063 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 C3orf70A6NLC5 250 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 H3BNX3 289 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 J3KTA2 159 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 NPC1O15118 1278 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 PRPF4O43172 522 aaKnown RBP eCLIP3.19□□□□□ -1.9
CD44-238ENST00000534296 NCK2O43639 380 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 ZC3H11AO75152 810 aaKnown RBP eCLIP3.19□□□□□ -1.9
CD44-238ENST00000534296 CNOT3O75175 753 aaKnown RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 SYF2O95926 243 aaKnown RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 ALDOAP04075 364 aaKnown RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 IL6STP40189 918 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 TECP42680 631 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 STARD3Q14849 445 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 ZNF260Q3ZCT1 412 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 LIPMQ5VYY2 423 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 WDR93Q6P2C0 686 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 DHRS13Q6UX07 377 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 LRIG3Q6UXM1 1119 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 NRSN1Q8IZ57 195 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 ENAHQ8N8S7 591 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 GLIS1Q8NBF1 620 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 NSMCE1Q8WV22 266 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 ASB12Q8WXK4 309 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 CELF1Q92879 486 aaKnown RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 TRMT61AQ96FX7 289 aaKnown RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 P2RY11Q96G91 374 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 ZNF845Q96IR2 970 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 ZFYVE19Q96K21 471 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 FOXP1Q9H334 677 aaPredicted RBP3.19□□□□□ -1.9
CD44-238ENST00000534296 GJB4Q9NTQ9 266 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 TMEM184CQ9NVA4 438 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 SLC39A10Q9ULF5 831 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 PHTF1Q9UMS5 762 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 SQORQ9Y6N5 450 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms