RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RGS7P49802 495 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 ZNF234Q14588 700 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 STILQ15468 1287 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 LCLAT1Q6UWP7 414 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 METTL3Q86U44 580 aaKnown RBP15.38■□□□□ 0.05
VPS28-215ENST00000531924 TMPRSS6Q8IU80 811 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 SLC41A1Q8IVJ1 513 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 MINDY1Q8N5J2 469 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 SPATA20Q8TB22 786 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 TOE1Q96GM8 510 aaKnown RBP15.38■□□□□ 0.05
VPS28-215ENST00000531924 ZNF419Q96HQ0 510 aaPredicted RBP15.38■□□□□ 0.05
VPS28-215ENST00000531924 PIWIL1Q96J94 861 aaKnown RBP15.38■□□□□ 0.05
VPS28-215ENST00000531924 GPR174Q9BXC1 333 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 CD248Q9HCU0 757 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 NUP205Q92621 2012 aa15.38■□□□□ 0.05
VPS28-215ENST00000531924 CACNA1BQ00975 2339 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 M0QYV0 167 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 PIK3R2O00459 728 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 NCAM1P13591 858 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 SLC11A2P49281 568 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 FNDC3BQ53EP0 1204 aaKnown RBP15.37■□□□□ 0.05
VPS28-215ENST00000531924 ADGRF1Q5T601 910 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 CACUL1Q86Y37 369 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 UNC45BQ8IWX7 931 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 WFIKKN2Q8TEU8 576 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 NELFBQ8WX92 580 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 SORCS1Q8WY21 1168 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 IRGQQ8WZA9 623 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 P2RY11Q96G91 374 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 MKRN2Q9H000 416 aaKnown RBP15.37■□□□□ 0.05
VPS28-215ENST00000531924 MIR1-1HGQ9H1L0 117 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 CAPN10Q9HC96 672 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 ITM2CQ9NQX7 267 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 MAN1B1Q9UKM7 699 aa15.37■□□□□ 0.05
VPS28-215ENST00000531924 P4HA2O15460 535 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 MSI1O43347 362 aaKnown RBP15.36■□□□□ 0.05
VPS28-215ENST00000531924 LATS1O95835 1130 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 PRKCHP24723 683 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 TPMTP51580 245 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 DAOAP59103 153 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 SIM1P81133 766 aaPredicted RBP15.36■□□□□ 0.05
VPS28-215ENST00000531924 SEMA3BQ13214 749 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CNGA2Q16280 664 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 NUGGCQ68CJ6 796 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 BHLHA9Q7RTU4 235 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CCDC117Q8IWD4 279 aaPredicted RBP15.36■□□□□ 0.05
VPS28-215ENST00000531924 FAM217AQ8IXS0 508 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CADM4Q8NFZ8 388 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 TFAP2BQ92481 460 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 DDX50Q9BQ39 737 aaKnown RBP15.36■□□□□ 0.05
VPS28-215ENST00000531924 NUP58Q9BVL2 599 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CD93Q9NPY3 652 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CLEC4EQ9ULY5 219 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 CTNND2Q9UQB3 1225 aa15.36■□□□□ 0.05
VPS28-215ENST00000531924 SPAARA0A1B0GVQ0 90 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 TYW5A2RUC4 315 aaKnown RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 UPK3BL1B0FP48 263 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 UPK3BL2E5RIL1 263 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 PMM2O15305 246 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 FBXO21O94952 628 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 GNA14O95837 355 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ATP5BP06576 529 aaKnown RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 KRT5P13647 590 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 SPINK2P20155 84 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 BRD2P25440 801 aaKnown RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 MAOBP27338 520 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 HOXD9P28356 352 aaPredicted RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 ENPP2Q13822 863 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 PMF1Q6P1K2 205 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 UNQ6494/PRO21346Q6UXR6 183 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 CHST9Q7L1S5 443 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 RRAGAQ7L523 313 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 FAM124AQ86V42 546 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ELOA2Q8IYF1 753 aaPredicted RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 AHI1Q8N157 1196 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 SCML4Q8N228 414 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 UBR7Q8N806 425 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ZNF557Q8N988 423 aaPredicted RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 RBBP8NLQ8NC74 664 aaPredicted RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 SLC35F5Q8WV83 523 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ZDHHC5Q9C0B5 715 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 MIS12Q9H081 205 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ST7Q9NRC1 585 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 ABCB8Q9NUT2 735 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 WSB2Q9NYS7 404 aaPredicted RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 USP36Q9P275 1121 aaKnown RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 GGA2Q9UJY4 613 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.35■□□□□ 0.05
VPS28-215ENST00000531924 PCDHB9Q9Y5E1 797 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 MYO18AQ92614 2054 aaKnown RBP15.35■□□□□ 0.05
VPS28-215ENST00000531924 CEP295Q9C0D2 2601 aa15.35■□□□□ 0.05
VPS28-215ENST00000531924 A0A1B0GTW7 788 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 BIN1O00499 593 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 TBL1XO60907 577 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 FGFR1OPO95684 399 aaKnown RBP15.34■□□□□ 0.05
VPS28-215ENST00000531924 LTFP02788 710 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 PROS1P07225 676 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 CD44P16070 742 aaKnown RBP15.34■□□□□ 0.05
VPS28-215ENST00000531924 POLR2EP19388 210 aaKnown RBP15.34■□□□□ 0.05
VPS28-215ENST00000531924 TBX4P57082 545 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms