RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 TMEM215Q68D42 235 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 KLHL10Q6JEL2 608 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 FOXR2Q6PJQ5 311 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 RABEPKQ7Z6M1 372 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 TRIML1Q8N9V2 468 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 KAT5Q92993 513 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 HSPA12BQ96MM6 686 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 ZSWIM1Q9BR11 485 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 MKRN2Q9H000 416 aaKnown RBP16.48■□□□□ 0.23
CPSF1-205ENST00000531042 PRDM16Q9HAZ2 1276 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 FSCN3Q9NQT6 498 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 STOML2Q9UJZ1 356 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.48■□□□□ 0.23
CPSF1-205ENST00000531042 CACNA1BQ00975 2339 aa16.48■□□□□ 0.23
CPSF1-205ENST00000531042 PCDH15Q96QU1 1955 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 FRYQ5TBA9 3013 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 CEP295Q9C0D2 2601 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 TIMM44O43615 452 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 TSPAN3O60637 253 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 NDUFS2O75306 463 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 KRT37O76014 449 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 HOXD9P28356 352 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-205ENST00000531042 RGS7P49802 495 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 ZNF445P59923 1031 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 GFPT1Q06210 699 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-205ENST00000531042 CETN1Q12798 172 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 PMF1Q6P1K2 205 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 MSANTD2Q6P1R3 559 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 DEFB124Q8NES8 71 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 NELFBQ8WX92 580 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 SORCS1Q8WY21 1168 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 IRGQQ8WZA9 623 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 CIPCQ9C0C6 399 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 ITM2CQ9NQX7 267 aa16.47■□□□□ 0.23
CPSF1-205ENST00000531042 USP36Q9P275 1121 aaKnown RBP16.47■□□□□ 0.23
CPSF1-205ENST00000531042 CKAP5Q14008 2032 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 BICDL2A1A5D9 508 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 M0QYV0 167 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 PIK3R2O00459 728 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 MSI1O43347 362 aaKnown RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 SYNCRIPO60506 623 aaKnown RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 LATS1O95835 1130 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 BRD2P25440 801 aaKnown RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 CD6P30203 668 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 ATXN3P54252 364 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 MORC3Q14149 939 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 STILQ15468 1287 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 ADGRF1Q5T601 910 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 RRAGAQ7L523 313 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 TMPRSS6Q8IU80 811 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 ARHGEF19Q8IW93 802 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 EHBP1Q8NDI1 1231 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 FOXJ1Q92949 421 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 TMA16Q96EY4 203 aaKnown RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 GTPBP2Q9BX10 602 aaKnown RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 WSB2Q9NYS7 404 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-205ENST00000531042 CTNND2Q9UQB3 1225 aa16.46■□□□□ 0.23
CPSF1-205ENST00000531042 USP24Q9UPU5 2620 aa16.46■□□□□ 0.22
CPSF1-205ENST00000531042 UPK3BL1B0FP48 263 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 KCNJ18B7U540 433 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 UPK3BL2E5RIL1 263 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 ARHGAP33O14559 1287 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 CALCAP01258 141 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 LTFP02788 710 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 NCAM1P13591 858 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 PRKCHP24723 683 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 HLA-FP30511 346 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 COPAP53621 1224 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 GCNT1Q02742 428 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 ARID5AQ03989 594 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 SEMA3BQ13214 749 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 SYCP2LQ5T4T6 812 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 SERPINA13PQ6UXR4 307 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 TRIM59Q8IWR1 403 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 RGL4Q8IZJ4 473 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 CLEC4CQ8WTT0 213 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 SIPA1Q96FS4 1042 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 TOE1Q96GM8 510 aaKnown RBP16.45■□□□□ 0.22
CPSF1-205ENST00000531042 HSFY1Q96LI6 401 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 SLC32A1Q9H598 525 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 WASF3Q9UPY6 502 aa16.45■□□□□ 0.22
CPSF1-205ENST00000531042 BIN1O00499 593 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 GADD45BO75293 160 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-205ENST00000531042 IGLV3-27P01718 113 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 EPHX1P07099 455 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 SYPP08247 313 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 TPMTP51580 245 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 SGSHP51688 502 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 MARSP56192 900 aaKnown RBP16.44■□□□□ 0.22
CPSF1-205ENST00000531042 STX17P56962 302 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 KCNH2Q12809 1159 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 FOXC1Q12948 553 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 WDR45BQ5MNZ6 344 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 KIAA0907Q7Z7F0 614 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-205ENST00000531042 PIP4P1Q86T03 277 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 HDDC3Q8N4P3 179 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 MINDY1Q8N5J2 469 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.44■□□□□ 0.22
CPSF1-205ENST00000531042 WFIKKN2Q8TEU8 576 aa16.44■□□□□ 0.22
CPSF1-205ENST00000531042 PRCCQ92733 491 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms