RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PIGVQ9NUD9 493 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 CLIC5Q9NZA1 410 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.99■■□□□ 1.112e-7■■■■□ 26
VPS28-212ENST00000530836 CALCOCO1Q9P1Z2 691 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 FBXW11Q9UKB1 542 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 DRG1Q9Y295 367 aaKnown RBP21.99■■□□□ 1.11
VPS28-212ENST00000530836 TBX10O75333 385 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 CXCR3P49682 368 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 GPR15P49685 360 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 ATXN1P54253 815 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 MRPS25P82663 173 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 ADCY2Q08462 1091 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 IFRD2Q12894 506 aaPredicted RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 ZC3H12AQ5D1E8 599 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 ANKRD54Q6NXT1 300 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 SCD5Q86SK9 330 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 CCDC185Q8N715 623 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 NKD2Q969F2 451 aaPredicted RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 SMOC2Q9H3U7 446 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 WDR6Q9NNW5 1121 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 MAN1C1Q9NR34 630 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 TLR8Q9NR97 1041 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 OLA1Q9NTK5 396 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 DZANK1Q9NVP4 752 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 R3HDM2Q9Y2K5 976 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 LIASO43766 372 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 ZMYND10O75800 440 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 IGLV3-25P01717 112 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 HOXB8P17481 243 aaPredicted RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 TGM2P21980 687 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 ADRA1BP35368 520 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 ARL4AP40617 200 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 PITX1P78337 314 aaPredicted RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 BYSLQ13895 437 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 ANKRD20A8PQ5CZ79 823 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 ELMSAN1Q6PJG2 1045 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 MTERF4Q7Z6M4 381 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 CCHCR1Q8TD31 782 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 DQX1Q8TE96 717 aaKnown RBP21.98■■□□□ 1.11
VPS28-212ENST00000530836 FBXO32Q969P5 355 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 TTLL2Q9BWV7 592 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 CRISPLD1Q9H336 500 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 WDCPQ9H6R7 721 aa21.98■■□□□ 1.11
VPS28-212ENST00000530836 XIRP2A4UGR9 3374 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 IL4RP24394 825 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 BRMS1LQ5PSV4 323 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 SDHAF4Q5VUM1 108 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 SYCE2Q6PIF2 218 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 ATG4AQ8WYN0 398 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 OVCA2Q8WZ82 227 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 MSLNLQ96KJ4 702 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 SERPINB11Q96P15 392 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 FAM129AQ9BZQ8 928 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 PRDM6Q9NQX0 595 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 GPATCH2LQ9NWQ4 482 aa21.97■■□□□ 1.11
VPS28-212ENST00000530836 SYNJ2BP-COX16A0A087WUM0 186 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 A0A1W2PQH9 124 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 APOL1O14791 398 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 ATP8B1O43520 1251 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 KCNA5P22460 613 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 ELF1P32519 619 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 VCPP55072 806 aaKnown RBP21.96■■□□□ 1.11
VPS28-212ENST00000530836 EIF4EBP2Q13542 120 aaPredicted RBP21.96■■□□□ 1.11
VPS28-212ENST00000530836 SNX1Q13596 522 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 PPP1R7Q15435 360 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 CA9Q16790 459 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 PPP6R3Q5H9R7 873 aaPredicted RBP21.96■■□□□ 1.11
VPS28-212ENST00000530836 DUPD1Q68J44 220 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 SLC9A4Q6AI14 798 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 MSANTD2Q6P1R3 559 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 RTL10Q7L3V2 364 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 TAC4Q86UU9 113 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 TCEAL8Q8IYN2 117 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 PDZD8Q8NEN9 1154 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 CDK5RAP1Q96SZ6 601 aaKnown RBP21.96■■□□□ 1.11
VPS28-212ENST00000530836 COX16Q9P0S2 106 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 PLXNA3P51805 1871 aa21.96■■□□□ 1.11
VPS28-212ENST00000530836 SLC38A8A6NNN8 435 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 H3BRJ5 948 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 IRAK2O43187 625 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 SEC24AO95486 1093 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ITGAVP06756 1048 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CSH1P0DML2 217 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CSH2P0DML3 217 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 KCNJ1P48048 391 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 USP46P62068 366 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 MMRN1Q13201 1228 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 BEND6Q5SZJ8 279 aaPredicted RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 EMBQ6PCB8 327 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CCDC149Q6ZUS6 474 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 SLC35B2Q8TB61 432 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CASKIN2Q8WXE0 1202 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 P3H4Q92791 437 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CCDC114Q96M63 670 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 KCTD15Q96SI1 283 aaPredicted RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 SPTBN5Q9NRC6 3674 aaKnown RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 H3BQ06 376 aaPredicted RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 SLC2A3P11169 496 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ATF6P18850 670 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ALDH1A3P47895 512 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms