RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 VGLL4Q14135 290 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 C1QTNF12Q5T7M4 302 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 CRLF3Q8IUI8 442 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SPATA18Q8TC71 538 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 HSPBAP1Q96EW2 488 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 OTUD5Q96G74 571 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ADPGKQ9BRR6 497 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SENP6Q9GZR1 1112 aaPredicted RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 EPB41L1Q9H4G0 881 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SIRPGQ9P1W8 387 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 HMGXB4Q9UGU5 601 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 CYTH4Q9UIA0 394 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 PHIPQ8WWQ0 1821 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 C3orf70A6NLC5 250 aaPredicted RBP14.65□□□□□ -0.06
USP48-213ENST00000529637 H7C0C1 242 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 DNAJA2O60884 412 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 RFPL1O75677 317 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 NFICP08651 508 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 CCDC166P0CW27 439 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 SLC5A2P31639 672 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 FDFT1P37268 417 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 ATP5OP48047 213 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 DBN1Q16643 649 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 EFCAB12Q6NXP0 572 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 FBXO16Q8IX29 292 aaPredicted RBP14.65□□□□□ -0.06
USP48-213ENST00000529637 ICA1LQ8NDH6 482 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 SMYD2Q9NRG4 433 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 CSADQ9Y600 493 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 ARID2Q68CP9 1835 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 H3BSA7 217 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 CCNT2O60583 730 aaKnown RBP14.65□□□□□ -0.06
USP48-213ENST00000529637 AOC1P19801 751 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 FUT4P22083 530 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 KDELR1P24390 212 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 CDH6P55285 790 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 MMRN1Q13201 1228 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 TMEM259Q4ZIN3 620 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 VWA5B1Q5TIE3 1220 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 OR6B2Q6IFH4 312 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 NPNTQ6UXI9 565 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 LBX2Q6XYB7 198 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 POLNQ7Z5Q5 900 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 PCGF5Q86SE9 256 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 DEFB107AQ8IZN7 70 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 LIN28AQ9H9Z2 209 aaKnown RBP14.65□□□□□ -0.06
USP48-213ENST00000529637 GINS2Q9Y248 185 aa14.65□□□□□ -0.06
USP48-213ENST00000529637 MIPP30301 263 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 ITGA9Q13797 1035 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 ACAP1Q15027 740 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 PGM2L1Q6PCE3 622 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 KIAA0319LQ8IZA0 1049 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 TTC13Q8NBP0 860 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 CNBD2Q96M20 576 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 PRPF18Q99633 342 aaKnown RBP14.64□□□□□ -0.07
USP48-213ENST00000529637 MAD1L1Q9Y6D9 718 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 TEX264Q9Y6I9 313 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 AK5Q9Y6K8 562 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 PCNTO95613 3336 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 IGKV6D-21A0A0A0MT36 114 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 SNNO75324 88 aaPredicted RBP14.64□□□□□ -0.07
USP48-213ENST00000529637 ERBB2P04626 1255 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 MSX2P35548 267 aaPredicted RBP14.64□□□□□ -0.07
USP48-213ENST00000529637 MYBPC1Q00872 1141 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 SH3D19Q5HYK7 790 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 KLC3Q6P597 504 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 MAP7D3Q8IWC1 876 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 UBR7Q8N806 425 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 LRRN4Q8WUT4 740 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 TWNKQ96RR1 684 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 XYLT2Q9H1B5 865 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 C2orf40Q9H1Z8 148 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 PLAC1Q9HBJ0 212 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.64□□□□□ -0.07
USP48-213ENST00000529637 HEY1Q9Y5J3 304 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 AP1G1O43747 822 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 ALDH1A3P47895 512 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 RGS7P49802 495 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 SH2D4BQ5SQS7 431 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 ATG16L1Q676U5 607 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 C16orf46Q6P387 395 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 ARFGAP1Q8N6T3 406 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 PIP4K2CQ8TBX8 421 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 DCUN1D1Q96GG9 259 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 CATSPER2Q96P56 530 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 CDT1Q9H211 546 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 MINDY3Q9H8M7 445 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 NGRNQ9NPE2 291 aaKnown RBP14.64□□□□□ -0.07
USP48-213ENST00000529637 DTNAQ9Y4J8 743 aa14.64□□□□□ -0.07
USP48-213ENST00000529637 TCRBV5S1A1TA0A578 114 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 FAM189A1O60320 539 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 PTPN11Q06124 597 aaPredicted RBP14.63□□□□□ -0.07
USP48-213ENST00000529637 DPYSL3Q14195 570 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 MAP3K21Q5TCX8 1036 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SH3PXD2AQ5TCZ1 1133 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 FAXCQ5TGI0 409 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 MROH9Q5TGP6 573 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 MAVSQ7Z434 540 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SLC26A11Q86WA9 606 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SLC16A10Q8TF71 515 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 CPB2Q96IY4 423 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms