RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZNF638Q14966 1978 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 TCRBV5S1A1TA0A578 114 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 HIDE1A8MVS5 230 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 F8VP50 259 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TULP2O00295 520 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 SART1O43290 800 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 TGM5O43548 720 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 CLASP2O75122 1294 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 PAPLNO95428 1278 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 SEC24AO95486 1093 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 ZBED1O96006 694 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 KRT3P12035 628 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 EDN3P14138 238 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 RPL17P18621 184 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 RRM1P23921 792 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 PPP3CCP48454 512 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 CLCN4P51793 760 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TKTL1P51854 596 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 EPHB3P54753 998 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 YWHAZP63104 245 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 SNRPNP63162 240 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 PLD1Q13393 1074 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 MAMLD1Q13495 774 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 COL19A1Q14993 1142 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 ACAP1Q15027 740 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 DDR2Q16832 855 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 MGAT5BQ3V5L5 792 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 PTPN20Q4JDL3 420 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 PEAR1Q5VY43 1037 aaPredicted RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 TMEM184AQ6ZMB5 413 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 MMS22LQ6ZRQ5 1243 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 MON1AQ86VX9 555 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 XYLT1Q86Y38 959 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 SCN4BQ8IWT1 228 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 KREMEN2Q8NCW0 462 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 C3orf20Q8ND61 904 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 ACRBPQ8NEB7 543 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 FEZF2Q8TBJ5 459 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 IPO4Q8TEX9 1081 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 SLC22A17Q8WUG5 538 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TTC9Q92623 222 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 SPACA7Q96KW9 195 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 PGLYRP2Q96PD5 576 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 NCAPGQ9BPX3 1015 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 DESI2Q9BSY9 194 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TRIM62Q9BVG3 475 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 LACRTQ9GZZ8 138 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 THAP2Q9H0W7 228 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TLE6Q9H808 572 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 CYP4F11Q9HBI6 524 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 ST7Q9NRC1 585 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 LATS2Q9NRM7 1088 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 KRT82Q9NSB4 513 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TMEM30AQ9NV96 361 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 ASNSD1Q9NWL6 643 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 CLDND1Q9NY35 253 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 MYO1AQ9UBC5 1043 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 CNOT8Q9UFF9 292 aaKnown RBP7.75□□□□□ -1.17
CD44-228ENST00000528455 SCML2Q9UQR0 700 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 FAM50BQ9Y247 325 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 SCINQ9Y6U3 715 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 DUSP10Q9Y6W6 482 aa7.75□□□□□ -1.17
CD44-228ENST00000528455 TMEM191CA6NGB0 347 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 E5RJQ4 531 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 H3BQ06 376 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 MYO1FO00160 1098 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 PRRG1O14668 218 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 PAPSS1O43252 624 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 RGS9O75916 674 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 CSPG5O95196 566 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 GLUD1P00367 558 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 ERBB2P04626 1255 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 HNRNPA1P09651 372 aaKnown RBP eCLIP7.74□□□□□ -1.17
CD44-228ENST00000528455 CSH1P0DML2 217 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 CSH2P0DML3 217 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 LCP1P13796 627 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 ABCB4P21439 1286 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 MSNP26038 577 aaKnown RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 YWHAQP27348 245 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 HOXA9P31269 272 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 IRS1P35568 1242 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 MAPK8P45983 427 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 RGS7P49802 495 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 CACNA2D1P54289 1103 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 ATP11AP98196 1134 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 HYAL1Q12794 435 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 CCDC142Q17RM4 750 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 PABPC1LQ4VXU2 614 aaKnown RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 ARHGAP29Q52LW3 1261 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 SNX30Q5VWJ9 437 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 PLPP4Q5VZY2 271 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 OR6B2Q6IFH4 312 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 LINC00114Q6XXX2 140 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 DENND5BQ6ZUT9 1274 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 SLC26A9Q7LBE3 791 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 DNAJB7Q7Z6W7 309 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 ITIH5Q86UX2 942 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 SIX6OS1Q8N1H7 587 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms