RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 HMGB1P1B2RPK0 211 aaPredicted RBP19.58■□□□□ 0.73
VPS28-207ENST00000526977 PRRG1O14668 218 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 LPXNO60711 386 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 ARHGEF15O94989 841 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 ETS1P14921 441 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 ATF6P18850 670 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 BMP8BP34820 402 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 CDH6P55285 790 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 MMRN1Q13201 1228 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 RAB30Q15771 203 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 SYPL2Q5VXT5 272 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 DENND2CQ68D51 928 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 PDE12Q6L8Q7 609 aaKnown RBP19.58■□□□□ 0.73
VPS28-207ENST00000526977 SCYL2Q6P3W7 929 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 RFX6Q8HWS3 928 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 GPR152Q8TDT2 470 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 TMEM121Q9BTD3 319 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 FRMD8P1Q9BZ68 369 aaPredicted RBP19.58■□□□□ 0.73
VPS28-207ENST00000526977 ADAM7Q9H2U9 754 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 CENPHQ9H3R5 247 aa19.58■□□□□ 0.73
VPS28-207ENST00000526977 PATJQ8NI35 1801 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 SLC38A8A6NNN8 435 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 RIPK2O43353 540 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 TFE3P19532 575 aaPredicted RBP19.58■□□□□ 0.72
VPS28-207ENST00000526977 DNAJB1P25685 340 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 PSEN1P49768 467 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 IFFO1Q0D2I5 559 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 EMC10Q5UCC4 262 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 IZUMO3Q5VZ72 239 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 BTBD8Q5XKL5 378 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 CCHCR1Q8TD31 782 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 MICAL1Q8TDZ2 1067 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 TSPYL1Q9H0U9 437 aa19.58■□□□□ 0.72
VPS28-207ENST00000526977 YBX2Q9Y2T7 364 aaKnown RBP19.58■□□□□ 0.72
VPS28-207ENST00000526977 C2orf71A6NGG8 1288 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 H3BNC9 293 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 C1RP00736 705 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 CSH1P0DML2 217 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 CSH2P0DML3 217 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 SULT1E1P49888 294 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 HDAC4P56524 1084 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 USP46P62068 366 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 DPYSL3Q14195 570 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 P3H1Q32P28 736 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 DNAJC21Q5F1R6 531 aaKnown RBP19.57■□□□□ 0.72
VPS28-207ENST00000526977 HIBCHQ6NVY1 386 aaPredicted RBP19.57■□□□□ 0.72
VPS28-207ENST00000526977 TRMT10CQ7L0Y3 403 aaKnown RBP19.57■□□□□ 0.72
VPS28-207ENST00000526977 BNIPLQ7Z465 357 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 GIPC2Q8TF65 315 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 PGAP3Q96FM1 320 aaPredicted RBP19.57■□□□□ 0.72
VPS28-207ENST00000526977 TBCBQ99426 244 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 TTLL2Q9BWV7 592 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 PBX4Q9BYU1 374 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 TMEM51Q9NW97 253 aa19.57■□□□□ 0.72
VPS28-207ENST00000526977 TGM5O43548 720 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 F9P00740 461 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 IL4RP24394 825 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 VEPH1Q14D04 833 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 KRT71Q3SY84 523 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 LILRA6Q6PI73 481 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 SCD5Q86SK9 330 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 TEKT4Q8WW24 435 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 FBXO32Q969P5 355 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 PWWP2AQ96N64 755 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 MAK16Q9BXY0 300 aaKnown RBP19.56■□□□□ 0.72
VPS28-207ENST00000526977 ADAM33Q9BZ11 813 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 TLR8Q9NR97 1041 aaKnown RBP19.56■□□□□ 0.72
VPS28-207ENST00000526977 YIPF1Q9Y548 306 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 PLXNA4Q9HCM2 1894 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 CEP290O15078 2479 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 M0QYT0 321 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 GRM6O15303 877 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 SKOR1P84550 965 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 PLD1Q13393 1074 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 PDK2Q15119 407 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 ZC3H12AQ5D1E8 599 aaKnown RBP19.56■□□□□ 0.72
VPS28-207ENST00000526977 AGBL2Q5U5Z8 902 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 PLPP4Q5VZY2 271 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 SPRED2Q7Z698 418 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 EDEM1Q92611 657 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 C10orf88Q9H8K7 445 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 GPATCH2LQ9NWQ4 482 aa19.56■□□□□ 0.72
VPS28-207ENST00000526977 HIDE1A8MVS5 230 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 APOC4-APOC2K7ER74 178 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 SGK1O00141 431 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 APOC2P02655 101 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 PECAM1P16284 738 aaPredicted RBP19.55■□□□□ 0.72
VPS28-207ENST00000526977 RDXP35241 583 aaKnown RBP19.55■□□□□ 0.72
VPS28-207ENST00000526977 PBX2P40425 430 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 EPHB3P54753 998 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 TAF10Q12962 218 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 GPS1Q13098 491 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 GPM6BQ13491 265 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 CCDC149Q6ZUS6 474 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 MAP7D3Q8IWC1 876 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 STKLD1Q8NE28 680 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 OVCA2Q8WZ82 227 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 RNF157Q96PX1 679 aa19.55■□□□□ 0.72
VPS28-207ENST00000526977 CDC42EP4Q9H3Q1 356 aaKnown RBP19.55■□□□□ 0.72
VPS28-207ENST00000526977 CLIC5Q9NZA1 410 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms