RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HMBOX1Q6NT76 420 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ESRP1Q6NXG1 681 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPUSD3Q6P087 351 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD16Q6P6B7 361 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALKBH5Q6P6C2 394 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IYDQ6PHW0 289 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNSTQ6PJW8 725 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP20A1Q6UW02 462 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL27RAQ6UWB1 636 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PET117Q6UWS5 81 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LAYNQ6UX15 382 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTNL9Q6UXG8 535 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SERPINA13PQ6UXR4 307 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 Q6YL49 198 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF783Q6ZMS7 281 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC73Q6ZRK6 1079 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 Q6ZSN1 163 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MFSD6Q6ZSS7 791 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM47EQ6ZV65 393 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BBS12Q6ZW61 710 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTN2A1Q7KYR7 527 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF44Q7L0R7 432 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC8DQ7L1W4 858 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTL10Q7L3V2 364 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASGRP2Q7LDG7 609 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHST3Q7LGC8 479 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAS1R1Q7RTX1 841 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRAPPC11Q7Z392 1133 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KANSL1Q7Z3B3 1105 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT28Q7Z3Y7 464 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HEATR3Q7Z4Q2 680 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 R3HCC1LQ7Z5L2 792 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKS1BQ7Z6G8 1248 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPLX4Q7Z7G2 160 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZSCAN2Q7Z7L9 614 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNT7Q86SF2 657 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADGRA1Q86SQ6 560 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLEC14AQ86T13 490 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RSPH3Q86UC2 560 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTN4RL1Q86UN2 441 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SESTD1Q86VW0 696 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NLRP14Q86W24 1093 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NLRP10Q86W26 655 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HEATR4Q86WZ0 1026 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 METTL23Q86XA0 190 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GATAD2AQ86YP4 633 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 C2CD5Q86YS7 1000 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LURAP1LQ8IV03 231 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LYSMD2Q8IV50 215 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNGA4Q8IV77 575 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIX1LQ8IVB5 337 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPOQ8IVL8 374 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAPKAPK5Q8IW41 473 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC44A2Q8IWA5 706 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADHFE1Q8IWW8 467 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHOT2Q8IXI1 618 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 YAF2Q8IY57 180 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DIS3L2Q8IYB7 885 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF168Q8IYW5 571 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRMT2AQ8IZ69 625 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SAMD14Q8IZD0 417 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NUP93Q8N1F7 819 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 VGLL2Q8N8G2 317 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 POMGNT2Q8NAT1 580 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLIS1Q8NBF1 620 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPC24Q8NBT2 197 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCTD6Q8NC69 237 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMRP1Q8NCR6 262 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC150Q8NCX0 1101 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DENND6BQ8NEG7 585 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR156Q8NFN8 814 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR6B3Q8NGW1 331 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LILRB1Q8NHL6 650 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLBD2Q8NHP8 589 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX55Q8NHQ9 600 aaKnown RBP eCLIP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GDAP1Q8TB36 358 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXO30Q8TB52 745 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ETNPPLQ8TBG4 499 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZCCHC10Q8TBK6 192 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPATA18Q8TC71 538 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MGARPQ8TDB4 240 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CREB3L4Q8TEY5 395 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOC3LQ8WTT2 800 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCARB1Q8WTV0 552 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DEPDC1BQ8WUY9 529 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AFG1LQ8WV93 481 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR60Q8WVS4 1066 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NRG4Q8WWG1 115 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ASB15Q8WXK1 588 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RIN2Q8WYP3 895 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ST8SIA4Q92187 359 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTF1Q92541 710 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX19Q92543 992 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D5Q92609 795 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP6NLQ92738 828 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP6V0A1Q93050 837 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX21Q969T3 373 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 JAKMIP2Q96AA8 810 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZUFSPQ96AP4 578 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SARAFQ96BY9 339 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms