RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 CPSF4O95639 269 aaKnown RBP13.63□□□□□ -0.23
TCOF1-214ENST00000515035 GSSP48637 474 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 TBX2Q13207 712 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-214ENST00000515035 TAB1Q15750 504 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 SAMD4BQ5PRF9 694 aaKnown RBP13.63□□□□□ -0.23
TCOF1-214ENST00000515035 ARMCX6Q7L4S7 300 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 TRPC4APQ8TEL6 797 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 MXRA8Q9BRK3 442 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 ANKEF1Q9NU02 776 aa13.63□□□□□ -0.23
TCOF1-214ENST00000515035 RPS6KA5O75582 802 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 IFNA14P01570 189 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ALADP13716 330 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 RFX5P48382 616 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NR6A1Q15406 480 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 KLHL12Q53G59 568 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 TMEM63BQ5T3F8 832 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 XRRA1Q6P2D8 792 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NEK10Q6ZWH5 1172 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 CYP4Z1Q86W10 505 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 CKAP2Q8WWK9 683 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 DLG3Q92796 817 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PRRG3Q9BZD7 231 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 KIAA1683Q9H0B3 1180 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 RMI1Q9H9A7 625 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PLGRKTQ9HBL7 147 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 MRPL39Q9NYK5 338 aaKnown RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 MAP3K20Q9NYL2 800 aaKnown RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 LRRIQ1Q96JM4 1722 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 MUTP22033 750 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 CHI3L1P36222 383 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 DGCR6Q14129 220 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 C11orf96Q7Z7L8 435 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 RTL3Q8N8U3 475 aaKnown RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 TSPAN14Q8NG11 270 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ADARB2Q9NS39 739 aaKnown RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NMRK1Q9NWW6 199 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 KIAA1210Q9ULL0 1709 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 DYNC1LI2O43237 492 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ADCY6O43306 1168 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 AKAP3O75969 853 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PCSK1P29120 753 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ALDH1A3P47895 512 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NR1H2P55055 460 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PKNOX1P55347 436 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NR1D2Q14995 579 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PDK3Q15120 406 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ZCCHC23Q6ZST2 131 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 DPP10Q8N608 796 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 KAT2BQ92831 832 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 LRMDAQ9H2I8 198 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 POLG2Q9UHN1 485 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 TK2O00142 265 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ITGB3P05106 788 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 C6orf222P0C671 652 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-214ENST00000515035 RARAP10276 462 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 ATP6V1C1P21283 382 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 SPDYCQ5MJ68 293 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 PERM1Q5SV97 790 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 C9orf131Q5VYM1 1079 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NECAB2Q7Z6G3 386 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 SLC47A2Q86VL8 602 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 SLC22A9Q8IVM8 553 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 FAM172AQ8WUF8 416 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 NUAK2Q9H093 628 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 KCNK4Q9NYG8 393 aa13.62□□□□□ -0.23
TCOF1-214ENST00000515035 SALL3Q9BXA9 1300 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 C2orf81A6NN90 581 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 RAD51BO15315 384 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 MAGEB2O15479 319 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 LCA5LO95447 670 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GP5P40197 560 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ITGA1P56199 1179 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 KRT73Q86Y46 540 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 B3GALNT2Q8NCR0 500 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GORASP1Q9BQQ3 440 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 CBWD1Q9BRT8 395 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ZNF518BQ9C0D4 1074 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 MBD2Q9UBB5 411 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 USP18Q9UMW8 372 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 STARD13Q9Y3M8 1113 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ZC3H11AO75152 810 aaKnown RBP eCLIP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 KRT36O76013 467 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 DDHD2O94830 711 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 TPBGLP0DKB5 382 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 CYP2B6P20813 491 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 MAGEA10P43363 369 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GTF2A2P52657 109 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ITGB3BPQ13352 177 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ACAP1Q15027 740 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 SHROOM1Q2M3G4 852 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 SV2CQ496J9 727 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ERMARDQ5T6L9 678 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ZDHHC13Q8IUH4 622 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 SIX5Q8N196 739 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 NUDT12Q9BQG2 462 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 UNKQ9C0B0 810 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 RIBC2Q9H4K1 309 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 TRIM39Q9HCM9 518 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 PRMT7Q9NVM4 692 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 TSPAN9O75954 239 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms