RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ILDR2Q71H61 639 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 C10orf107Q8IVU9 208 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 EBF3Q9H4W6 596 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SEPT10Q9P0V9 454 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ZNF112Q9UJU3 913 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ARID2Q68CP9 1835 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 IGKV6-21A0A0C4DH24 114 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 A6NJR5 290 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 ALDOAP04075 364 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MGAT1P26572 445 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 WASHC5Q12768 1159 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 OLIG2Q13516 323 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PDE1CQ14123 709 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TMEM132DQ14C87 1099 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SLC9A4Q6AI14 798 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 LBX2Q6XYB7 198 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CDKL3Q8IVW4 592 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CXorf38Q8TB03 319 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MOCOSQ96EN8 888 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 EMCNQ9ULC0 261 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TXNDC9O14530 226 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CPOXP36551 454 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 ITGA9Q13797 1035 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TCHHL1Q5QJ38 904 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 OLFML1Q6UWY5 402 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CMC1Q7Z7K0 106 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TNS4Q8IZW8 715 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MCUQ8NE86 351 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 KIF12Q96FN5 646 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 IFT43Q96FT9 208 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MRPL45Q9BRJ2 306 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TRIM4Q9C037 500 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CYP3A43Q9HB55 503 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 DPP3Q9NY33 737 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TMEM216Q9P0N5 145 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 AKT3Q9Y243 479 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PPEF2O14830 753 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 RNASEH1O60930 286 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PDGFRBP09619 1106 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 FGF3P11487 239 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 LCP1P13796 627 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 TYK2P29597 1187 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 ARRB2P32121 409 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SLC6A3Q01959 620 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 USP4Q13107 963 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 EFHC1Q5JVL4 640 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CWF19L1Q69YN2 538 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 RNF111Q6ZNA4 994 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 FAM131BQ86XD5 332 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 HACE1Q8IYU2 909 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 GALNT15Q8N3T1 639 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 LRRC39Q96DD0 335 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 RTP4Q96DX8 246 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PPP1R36Q96LQ0 422 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 XPNPEP3Q9NQH7 507 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PDGFCQ9NRA1 345 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PCDHA11Q9Y5I1 949 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 BRWD3Q6RI45 1802 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PLIN3O60664 434 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SIN3BO75182 1162 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 ERVK-10P10266 1014 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 ARF4P18085 180 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SERPINB6P35237 376 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SERPINB9P50453 376 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 RBBP5Q15291 538 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MBLAC2Q68D91 279 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 GADL1Q6ZQY3 521 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 CCNYQ8ND76 341 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 NDRG1Q92597 394 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PGBD4Q96DM1 585 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 SPATC1LQ9H0A9 340 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 MOCS1Q9NZB8 636 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 PIM2Q9P1W9 311 aa9.54□□□□□ -0.88
LIMCH1-215ENST00000512632 KIF3CO14782 793 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 ADCY6O43306 1168 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 DCXO43602 365 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 OPHN1O60890 802 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 USP12O75317 370 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 STK10O94804 968 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 TGFB3P10600 412 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 GOT1P17174 413 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 L1CAMP32004 1257 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 PACS1Q6VY07 963 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 HPS6Q86YV9 775 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 DEFB107AQ8IZN7 70 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 OR6B3Q8NGW1 331 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 AGAP3Q96P47 875 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 IFT122Q9HBG6 1241 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 TMPRSS4Q9NRS4 437 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 DTLQ9NZJ0 730 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 TXNDC16Q9P2K2 825 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 HESX1Q9UBX0 185 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 AP4E1Q9UPM8 1137 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 BIRC5O15392 142 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 SNUPNO95149 360 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 GSTA2P09210 222 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 INSRRP14616 1297 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 ADORA2BP29275 332 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 COPAP53621 1224 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 RBP5P82980 135 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms