RNA–Protein interactions for RNA: ENST00000509900.5

PTPN20-223, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 693 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-223	ENST00000509900	SIGLEC6	O43699	453 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	ATP2C2	O75185	946 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	MAPT	P10636	758 aa	Known RBP	10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	RBMS1	P29558	406 aa	Known RBP	10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	CASR	P41180	1078 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	RXRG	P48443	463 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	ARRB1	P49407	418 aa	Predicted RBP	10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	BCAT1	P54687	386 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	EVC	P57679	992 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	TAF10	Q12962	218 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	CLCA4	Q14CN2	919 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	TBR1	Q16650	682 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	FBXL16	Q8N461	479 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	TMEM161B	Q8NDZ6	487 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	TNFRSF25	Q93038	417 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	NTPCR	Q9BSD7	190 aa	Known RBP	10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	LHX5	Q9H2C1	402 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	EBF2	Q9HAK2	575 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	GDF3	Q9NR23	364 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	GEMIN8	Q9NWZ8	242 aa	Known RBP	10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	DPP3	Q9NY33	737 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	MARK1	Q9P0L2	795 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	PLAA	Q9Y263	795 aa		10.14	□□□□□ -0.79
PTPN20-223	ENST00000509900	PTPRJ	Q12913	1337 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	PDZD2	O15018	2839 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	HIVEP3	Q5T1R4	2406 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900		A0A1W2PPC4	97 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900		A0A1W2PR77	199 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	OGT	O15294	1046 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	LZTS3	O60299	673 aa	Predicted RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	GREM1	O60565	184 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	BDNF	P23560	247 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	DUSP3	P51452	185 aa	Predicted RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	CDH8	P55286	799 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	NOP14	P78316	857 aa	Known RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	RELB	Q01201	579 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	KRT32	Q14532	448 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	ZNF234	Q14588	700 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	NCAPH	Q15003	741 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	KYAT1	Q16773	422 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	ISX	Q2M1V0	245 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	SV2C	Q496J9	727 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	FAM171B	Q6P995	826 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	VSTM1	Q6UX27	236 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	TPGS1	Q6ZTW0	290 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	CLEC14A	Q86T13	490 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	CD302	Q8IX05	232 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	CEP295NL	Q96MC4	621 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	RUSC1	Q9BVN2	902 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	BTBD1	Q9H0C5	482 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	GZF1	Q9H116	711 aa	Predicted RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	WDR35	Q9P2L0	1181 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	TJP2	Q9UDY2	1190 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	FBXO10	Q9UK96	956 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	CPSF3	Q9UKF6	684 aa	Known RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	DERA	Q9Y315	318 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	NYNRIN	Q9P2P1	1898 aa	Known RBP	10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	HIVEP1	P15822	2718 aa		10.13	□□□□□ -0.79
PTPN20-223	ENST00000509900	ESPL1	Q14674	2120 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900		A0A1B0GVM2	712 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	NPC1	O15118	1278 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	CYP26A1	O43174	497 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	GJB6	O95452	261 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	IRF1	P10914	325 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	CD38	P28907	300 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	PTK2	Q05397	1052 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	GEN1	Q17RS7	908 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	KIAA0895L	Q68EN5	471 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	RBBP8NL	Q8NC74	664 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	NSUN7	Q8NE18	718 aa	Known RBP	10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	OR2T3	Q8NH03	318 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	BHMT	Q93088	406 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	MYLPF	Q96A32	169 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	ATXN7L3B	Q96GX2	97 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	C17orf75	Q9HAS0	396 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	PLK2	Q9NYY3	685 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	C2CD2	Q9Y426	696 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	PCDHGA8	Q9Y5G5	932 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	SNX14	Q9Y5W7	946 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900	MTOR	P42345	2549 aa		10.12	□□□□□ -0.79
PTPN20-223	ENST00000509900		F8VP50	259 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	GABRD	O14764	452 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	NOBOX	O60393	691 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	SDC3	O75056	442 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	EPHX1	P07099	455 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	RNF224	P0DH78	156 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	MUT	P22033	750 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	CDC25A	P30304	524 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	CTSO	P43234	321 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	MFAP3	P55082	362 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	NXPH1	P58417	271 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	RAB15	P59190	212 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	DAB2	P98082	770 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	ZNF211	Q13398	564 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	CAMK2G	Q13555	558 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	KCNJ12	Q14500	433 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	TGIF1	Q15583	401 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	SCARA3	Q6AZY7	606 aa		10.11	□□□□□ -0.79
PTPN20-223	ENST00000509900	C4orf50	Q6ZRC1	276 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 48 ms