RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PLAG1Q6DJT9 500 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 TRILQ7L0X0 811 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 SLC35G2Q8TBE7 412 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 PHF21BQ96EK2 531 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 SLITRK1Q96PX8 696 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 B3GNT5Q9BYG0 378 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 AAMDCQ9H7C9 122 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 ERVK-5Q9HDB9 667 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 HPSEQ9Y251 543 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 USP19O94966 1318 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 E2F8A0AVK6 867 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 PKMP14618 531 aaKnown RBP3.35□□□□□ -1.87
NUP54-208ENST00000508604 ROR2Q01974 943 aaKnown RBP3.35□□□□□ -1.87
NUP54-208ENST00000508604 CNGA2Q16280 664 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 ODF3L2Q3SX64 289 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 ANXA2RQ3ZCQ2 193 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 SWSAP1Q6NVH7 229 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 DHRS13Q6UX07 377 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 FAM47BQ8NA70 645 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 MBD3L2Q8NHZ7 208 aaPredicted RBP3.35□□□□□ -1.87
NUP54-208ENST00000508604 ZCRB1Q8TBF4 217 aaKnown RBP3.35□□□□□ -1.87
NUP54-208ENST00000508604 WFIKKN2Q8TEU8 576 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 PRR11Q96HE9 360 aaPredicted RBP3.35□□□□□ -1.87
NUP54-208ENST00000508604 ELOVL1Q9BW60 279 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 RMI1Q9H9A7 625 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 STK32BQ9NY57 414 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 UTS2RQ9UKP6 389 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 SLC8A2Q9UPR5 921 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 COL4A3BPQ9Y5P4 624 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 INSL5Q9Y5Q6 135 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 SPATA31A5Q5VU36 1347 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 SPATA31A7Q8IWB4 1347 aa3.35□□□□□ -1.87
NUP54-208ENST00000508604 DENND3A2RUS2 1198 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 TUSC2O75896 110 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 CPA1P15085 419 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 BTF3P20290 206 aaKnown RBP3.34□□□□□ -1.87
NUP54-208ENST00000508604 SOX2P48431 317 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 COMPP49747 757 aaPredicted RBP3.34□□□□□ -1.87
NUP54-208ENST00000508604 ART1P52961 327 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 RPS16P62249 146 aaKnown RBP3.34□□□□□ -1.87
NUP54-208ENST00000508604 KCNAB1Q14722 419 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 C3orf38Q5JPI3 329 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 PRAMEF19Q5SWL8 479 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 MANEALQ5VSG8 457 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 RBM23Q86U06 439 aaKnown RBP3.34□□□□□ -1.87
NUP54-208ENST00000508604 ZBTB34Q8NCN2 500 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 GJA10Q969M2 543 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 CHST8Q9H2A9 424 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 PCDH12Q9NPG4 1184 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 VPS51Q9UID3 782 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 OGDHLQ9ULD0 1010 aa3.34□□□□□ -1.87
NUP54-208ENST00000508604 OR6C75A6NL08 312 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 PODXLO00592 558 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 PRYO14603 147 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 CTNND1O60716 968 aaKnown RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 IFNA2P01563 188 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 MMP8P22894 467 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 NDUFS1P28331 727 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 IGHMBP2P38935 993 aaKnown RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 INO80DQ53TQ3 878 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 PARM1Q6UWI2 310 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 LRIG3Q6UXM1 1119 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 RTL10Q7L3V2 364 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SDR16C5Q8N3Y7 309 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 ARL14EPQ8N8R7 260 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 LMO3Q8TAP4 145 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 EME1Q96AY2 570 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 ZNF845Q96IR2 970 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 FAM227BQ96M60 508 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 TAAR9Q96RI9 348 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 C22orf23Q9BZE7 217 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 ISCUQ9H1K1 167 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 RGS17Q9UGC6 210 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 PCDHB2Q9Y5E7 798 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 A6NNC1 897 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 PRPF3O43395 683 aaKnown RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 FRS3O43559 492 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SOCS5O75159 536 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SGPL1O95470 568 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 RHCEP18577 417 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SLC8A1P32418 973 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 CARSP49589 748 aaKnown RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 KRTAP10-5P60370 271 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 BFSP2Q13515 415 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 KCNJ12Q14500 433 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 ACOX1Q15067 660 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 AASDHQ4L235 1098 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 DDIASQ8IXT1 998 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 CLMNQ96JQ2 1002 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 GATA5Q9BWX5 397 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 DCLK3Q9C098 648 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SLC25A32Q9H2D1 315 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 SIRT3Q9NTG7 399 aaPredicted RBP3.33□□□□□ -1.88
NUP54-208ENST00000508604 ZNF212Q9UDV6 495 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 ZNF180Q9UJW8 692 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 LAMP3Q9UQV4 416 aa3.33□□□□□ -1.88
NUP54-208ENST00000508604 RHODO00212 210 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 MDM4O15151 490 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 PRSS2P07478 247 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 HTR7P34969 479 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms