RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ARHGAP8P85298 464 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 IFRD2Q12894 506 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 SIM2Q14190 667 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 NAA30Q147X3 362 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 LONRF2Q1L5Z9 754 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HSF5Q4G112 596 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 PREPLQ4J6C6 727 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 ARHGAP17Q68EM7 881 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HTR3DQ70Z44 454 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 ERMP1Q7Z2K6 904 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 REXO1L1PQ8IX06 675 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 KIAA2013Q8IYS2 634 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 DCLK2Q8N568 766 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 MSANTD4Q8NCY6 345 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 TTC16Q8NEE8 873 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 SLC35C1Q96A29 364 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 ACDQ96AP0 544 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 EEF2KMTQ96G04 330 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 LOXL4Q96JB6 756 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HEXIM2Q96MH2 286 aaKnown RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 KCTD15Q96SI1 283 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 CDK5RAP1Q96SZ6 601 aaKnown RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 PNKPQ96T60 521 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HINFPQ9BQA5 517 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 CCSER2Q9H7U1 834 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 MMRN2Q9H8L6 949 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 CISHQ9NSE2 258 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 FAM49BQ9NUQ9 324 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 C2orf42Q9NWW7 574 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 SMPD4Q9NXE4 827 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 CLIC5Q9NZA1 410 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HMGXB4Q9UGU5 601 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 EBF1Q9UH73 591 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 GMEB2Q9UKD1 530 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 SH3BP1Q9Y3L3 701 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 USP3Q9Y6I4 520 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 MYH10P35580 1976 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 BICDL2A1A5D9 508 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 K7EQS6 105 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 P4HA2O15460 535 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TLR5O60602 858 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GNA14O95837 355 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CYP17A1P05093 508 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CD58P19256 250 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ACO1P21399 889 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TGM1P22735 817 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TBXAS1P24557 533 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ADORA2BP29275 332 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GRIA2P42262 883 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TNFRSF4P43489 277 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 PMS1P54277 932 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 RAD23BP54727 409 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 SLC8A3P57103 927 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 YWHAEP62258 255 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GAD2Q05329 585 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GOLGA8FQ08AF8 430 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 DMWDQ09019 674 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GOLGA8DPQ0D2H9 430 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CETN1Q12798 172 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ORC1Q13415 861 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 MORC3Q14149 939 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GAB4Q2WGN9 574 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CBWD6Q4V339 395 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CBWD3Q5JTY5 395 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CBWD5Q5RIA9 395 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 PPP1R26Q5T8A7 1209 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TCERG1LQ5VWI1 586 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 PKN3Q6P5Z2 889 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 Q6ZVU0 165 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CCDC50Q8IVM0 306 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 DHX40Q8IX18 779 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 LINC00528Q8N1L1 170 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ANKRD52Q8NB46 1076 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 SLC4A11Q8NBS3 891 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 USP33Q8TEY7 942 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GAB3Q8WWW8 586 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 EZH1Q92800 747 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ZC3H10Q96K80 434 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 NACA2Q9H009 215 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CXorf56Q9H5V9 222 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 DLL3Q9NYJ7 618 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GMIPQ9P107 970 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 MAN1B1Q9UKM7 699 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 CDV3Q9UKY7 258 aaKnown RBP8.41□□□□□ -1.06
SCN1A-207ENST00000507401 MRFAP1Q9Y605 127 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 GPR179Q6PRD1 2367 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 ATG2BQ96BY7 2078 aa8.41□□□□□ -1.06
SCN1A-207ENST00000507401 TRIM49BA6NDI0 452 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 SRRM3A6NNA2 597 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 USP27XA6NNY8 438 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 HOXC11O43248 304 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 GREM1O60565 184 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 RPP40O75818 363 aaKnown RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 URI1O94763 535 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 KAT7O95251 611 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 APBB3O95704 486 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 TBX18O95935 607 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 APODP05090 189 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms