RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NKD2Q969F2 451 aaPredicted RBP13.86□□□□□ -0.19
GPC1-209ENST00000495100 GCOM2Q9BZD3 368 aaPredicted RBP13.86□□□□□ -0.19
GPC1-209ENST00000495100 TMEM134Q9H6X4 195 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 XAB2Q9HCS7 855 aaKnown RBP13.86□□□□□ -0.19
GPC1-209ENST00000495100 DOCK5Q9H7D0 1870 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 PEX1O43933 1283 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 RPS12P25398 132 aaKnown RBP13.86□□□□□ -0.19
GPC1-209ENST00000495100 SLC6A3Q01959 620 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 TNFAIP2Q03169 654 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 SYPL2Q5VXT5 272 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 C10orf107Q8IVU9 208 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 DEFB107AQ8IZN7 70 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 ARHGAP24Q8N264 748 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 PABPC5Q96DU9 382 aaKnown RBP13.86□□□□□ -0.19
GPC1-209ENST00000495100 BTBD10Q9BSF8 475 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 TMEM109Q9BVC6 243 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 ZNF518BQ9C0D4 1074 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 ARHGEF3Q9NR81 526 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 KRT82Q9NSB4 513 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 NFASCO94856 1347 aa13.86□□□□□ -0.19
GPC1-209ENST00000495100 MFSD11O43934 449 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 B3GAT3O94766 335 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 USP10Q14694 798 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 EFHC2Q5JST6 749 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 LPCAT4Q643R3 524 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 RNF43Q68DV7 783 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 RIOX2Q8IUF8 465 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 ANKRD13AQ8IZ07 590 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 RIBC1Q8N443 379 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 ANKLE1Q8NAG6 615 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 FAM156AQ8NDB6 213 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 HTR3CQ8WXA8 447 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 GAD1Q99259 594 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 APBA2Q99767 749 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 MIPEPQ99797 713 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 WDR83Q9BRX9 315 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 OXCT2Q9BYC2 517 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 NUF2Q9BZD4 464 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SYBUQ9NX95 663 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 ADA2Q9NZK5 511 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SYNPO2Q9UMS6 1093 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 DRG1Q9Y295 367 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 SDK1Q7Z5N4 2213 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 AP1G2O75843 785 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 AMHP03971 560 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SKIP12755 728 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SLC10A2Q12908 348 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 MMEL1Q495T6 779 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 FBXO47Q5MNV8 452 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 EMC10Q5UCC4 262 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 CDKL3Q8IVW4 592 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.85□□□□□ -0.19
GPC1-209ENST00000495100 PPWD1Q96BP3 646 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 NDE1Q9NXR1 346 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.85□□□□□ -0.19
GPC1-209ENST00000495100 BFARQ9NZS9 450 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 GGA2Q9UJY4 613 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SBF2Q86WG5 1849 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 DCAF8L1A6NGE4 600 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SPDYE5A6NIY4 337 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 IL18RAPO95256 599 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 GSTA2P09210 222 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 PIRTP0C851 137 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 EPHA3P29320 983 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 CTBP1Q13363 440 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 SPDYCQ5MJ68 293 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 LDB1Q86U70 411 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 ERO1BQ86YB8 467 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 TREML1Q86YW5 311 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 BANPQ8N9N5 519 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 PDCD6IPQ8WUM4 868 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 NIFKQ9BYG3 293 aaKnown RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 WWP1Q9H0M0 922 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 NMRK1Q9NWW6 199 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.85□□□□□ -0.19
GPC1-209ENST00000495100 SCOCQ9UIL1 159 aa13.85□□□□□ -0.19
GPC1-209ENST00000495100 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 CNTRLQ7Z7A1 2325 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ATP6AP2A0A1C7CYW4 349 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 C2CD4BA6NLJ0 364 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 GSC2O15499 205 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 BNIP3LO60238 219 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ATP6AP2O75787 350 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ENDOD1O94919 500 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 NUDT2P50583 147 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 AFF1P51825 1210 aaKnown RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 CDK16Q00536 496 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 NOMO1Q15155 1222 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.84□□□□□ -0.19
GPC1-209ENST00000495100 IFNEQ86WN2 208 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 GPRC5AQ8NFJ5 357 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 PHF21BQ96EK2 531 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 TSC22D3Q99576 134 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ULBP1Q9BZM6 244 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 PDHXO00330 501 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 T-ENOLP0DO92 83 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 HDAC4P56524 1084 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 RTP1P59025 263 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 KLC1Q07866 573 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 C9orf131Q5VYM1 1079 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms