RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MFSD14AQ96MC6 490 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 PAIP1Q9H074 479 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 GID8Q9NWU2 228 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 MYPNQ86TC9 1320 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 CYP2F1P24903 491 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SOX11P35716 441 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 ELK3P41970 407 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 VEPH1Q14D04 833 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 CDC26Q8NHZ8 85 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 FAXDC2Q96IV6 333 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 CAMKK2Q96RR4 588 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SNX13Q9Y5W8 968 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 GSTA4O15217 222 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 TNFAIP8O95379 198 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC25A3Q00325 362 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SPIRE1Q08AE8 756 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 FAAP100Q0VG06 881 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 RNF180Q86T96 592 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 C12orf56Q8IXR9 622 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 PPHLN1Q8NEY8 458 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 MBOAT7Q96N66 472 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 TASP1Q9H6P5 420 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 A0A1W2PPM1 405 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 CHEK2O96017 543 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 NOMO3P69849 1222 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 DCP1BQ8IZD4 617 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 APOPT1Q96IL0 206 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 UBP1Q9NZI7 540 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 TNFSF13BQ9Y275 285 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 LRP6O75581 1613 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 USP1O94782 785 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 ESRRBO95718 433 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 CCDC130P13994 396 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SPRP35270 261 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 RTP1P59025 263 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 C10orf120Q5SQS8 335 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 IL31Q6EBC2 164 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 CHSY1Q86X52 802 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 PRDM5Q9NQX1 630 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC39A10Q9ULF5 831 aa16.75■□□□□ 0.27
CCDC88B-209ENST00000494080 RPTORQ8N122 1335 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 A0A0B4J269 797 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 NKRFO15226 690 aaKnown RBP eCLIP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 ONECUT3O60422 494 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 VAV1P15498 845 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SREBF2Q12772 1141 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 BHMTQ93088 406 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 MMADHCQ9H3L0 296 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 PHRF1Q9P1Y6 1649 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 KBTBD13C9JR72 458 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 LYNP07948 512 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 CHN2P52757 468 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 CCDC15Q0P6D6 951 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 PDK3Q15120 406 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 LIN52Q52LA3 116 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 TTC27Q6P3X3 843 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 BNC2Q6ZN30 1099 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 TAS2R42Q7RTR8 314 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 DAW1Q8N136 415 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 ZNF398Q8TD17 642 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 TRPC7Q9HCX4 862 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 E5RI56 91 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 NFKBIEO00221 500 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 E2F6O75461 281 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 USP2O75604 605 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 ALADP13716 330 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 AMPD1P23109 780 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 MAPRE2Q15555 327 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SPRED3Q2MJR0 410 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 MFSD4BQ5TF39 518 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SGF29Q96ES7 293 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 GAD1Q99259 594 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SYT15Q9BQS2 421 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 NKX1-2Q9UD57 310 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 CHKBQ9Y259 395 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 MYH10P35580 1976 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 ATRNL1Q5VV63 1379 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SMIM31A0A1B0GVY4 71 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 JCHAINP01591 159 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 HMGCRP04035 888 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 RECQLP46063 649 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 ANO7Q6IWH7 933 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 KATNAL2Q8IYT4 538 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 MTMR14Q8NCE2 650 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 SH3TC2Q8TF17 1288 aa16.74■□□□□ 0.27
CCDC88B-209ENST00000494080 KLHL33A6NCF5 533 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 KCNK1O00180 336 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 SNX2O60749 519 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 ASS1P00966 412 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 CST3P01034 146 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 THRAP10827 490 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 TGM2P21980 687 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 ATP1A4Q13733 1029 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC5A9Q2M3M2 681 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 PDPK2PQ6A1A2 396 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 FRA10AC1Q70Z53 315 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 ARL10Q8N8L6 244 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 TMEM109Q9BVC6 243 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 CATSPERBQ9H7T0 1116 aa16.73■□□□□ 0.27
CCDC88B-209ENST00000494080 ZNF214Q9UL59 606 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms