RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 CMASQ8NFW8 434 aaPredicted RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 USP33Q8TEY7 942 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 UBE2OQ9C0C9 1292 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PRG3Q9Y2Y8 225 aaPredicted RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 STARD13Q9Y3M8 1113 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 LOXHD1Q8IVV2 1947 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CARNS1A5YM72 827 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ALDH2P05091 517 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MPOP05164 745 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 DRD4P21917 467 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 HTR7P34969 479 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 HARS2P49590 506 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CLNS1AP54105 237 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MTFR1Q15390 333 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ELMSAN1Q6PJG2 1045 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 RFX8Q6ZV50 586 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 SLC35B2Q8TB61 432 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 FBXO32Q969P5 355 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ZBTB10Q96DT7 871 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CPNE1Q99829 537 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 FAM167BQ9BTA0 163 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ADAM33Q9BZ11 813 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ALG13Q9NP73 1137 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MRPL40Q9NQ50 206 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 TLR8Q9NR97 1041 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 GDAP2Q9NXN4 497 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 SIX4Q9UIU6 781 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 VANGL2Q9ULK5 521 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CDY1Q9Y6F8 540 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 FSBPO95073 299 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MAP3K6O95382 1288 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 USP17L7P0C7H9 530 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MYL2P10916 166 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MLNP12872 115 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 GRK2P25098 689 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 HDAC4P56524 1084 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 GSCP56915 257 aaPredicted RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 USP10Q14694 798 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 NAA25Q14CX7 972 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CHI3L2Q15782 390 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 DNAL1Q4LDG9 190 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 INTS6LQ5JSJ4 861 aaKnown RBP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ANKS1BQ7Z6G8 1248 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PLD5Q8N7P1 536 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ARMC2Q8NEN0 867 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 IPMKQ8NFU5 416 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 NPLOC4Q8TAT6 608 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PIK3R5Q8WYR1 880 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 HAPLN2Q9GZV7 340 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 SLC40A1Q9NP59 571 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 ARHGEF38Q9NXL2 777 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PHIPQ8WWQ0 1821 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PRPF4O43172 522 aaKnown RBP eCLIP7.56□□□□□ -1.2
NPHP3-208ENST00000490993 CFHP08603 1231 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 KITP10721 976 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 PYGBP11216 843 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 SLC11A2P49281 568 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 NOGQ13253 232 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 TUSC3Q13454 348 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 MMEL1Q495T6 779 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 TRABD2AQ86V40 505 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 RELL1Q8IUW5 271 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 HDAC11Q96DB2 347 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 TELO2Q9Y4R8 837 aa7.56□□□□□ -1.2
NPHP3-208ENST00000490993 FOCADQ5VW36 1801 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 ZNF487B1APH4 448 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 SEPT4O43236 478 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 PGK1P00558 417 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 YBX3P16989 372 aaKnown RBP eCLIP7.55□□□□□ -1.2
NPHP3-208ENST00000490993 KLRC2P26717 231 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 GP5P40197 560 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 SERPINB4P48594 390 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 LILRA4P59901 499 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 SP3Q02447 781 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 CHSY1Q86X52 802 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 IFNL1Q8IU54 200 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 ZNF398Q8TD17 642 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 TCP10LQ8TDR4 215 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 CPT1BQ92523 772 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 SLC9A7Q96T83 725 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 SEZ6LQ9BYH1 1024 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 PRKD2Q9BZL6 878 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.55□□□□□ -1.2
NPHP3-208ENST00000490993 TKTL2Q9H0I9 626 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 LRRC4CQ9HCJ2 640 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 EPS15L1Q9UBC2 864 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 CTNNAL1Q9UBT7 734 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 ADAMTSL1Q8N6G6 1762 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 CHEK2O96017 543 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 BDNFP23560 247 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 MAP2K2P36507 400 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 ALDH7A1P49419 539 aaKnown RBP7.55□□□□□ -1.2
NPHP3-208ENST00000490993 PRKAA2P54646 552 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 MTM1Q13496 603 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 CCDC153Q494R4 210 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 BRMS1LQ5PSV4 323 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 KYAT3Q6YP21 454 aaKnown RBP7.55□□□□□ -1.2
NPHP3-208ENST00000490993 NLRP9Q7RTR0 991 aa7.55□□□□□ -1.2
NPHP3-208ENST00000490993 ACMSDQ8TDX5 336 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms