RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SOAT2O75908 522 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 USP17L7P0C7H9 530 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 NOMO1Q15155 1222 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 DCAF6Q58WW2 860 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 IZUMO3Q5VZ72 239 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SLC9A4Q6AI14 798 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 PLD5Q8N7P1 536 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 CHMP6Q96FZ7 201 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 PLCD4Q9BRC7 762 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF670Q9BS34 389 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 ZBED2Q9BTP6 218 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 ZCWPW1Q9H0M4 648 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 POPDC2Q9HBU9 364 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 AP4E1Q9UPM8 1137 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 NAALADL1Q9UQQ1 740 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 PTPRSQ13332 1948 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 LCHNA4D1U4 455 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 RIPK2O43353 540 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 EFEMP2O95967 443 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SCTRP47872 440 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 GPR15P49685 360 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 GDF10P55107 478 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 EIF3EP60228 445 aaKnown RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 TFDP2Q14188 446 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 HIBCHQ6NVY1 386 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 HOOK3Q86VS8 718 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SPATS2Q86XZ4 545 aaKnown RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SPATA2LQ8IUW3 424 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 MAP7D3Q8IWC1 876 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SCAMP5Q8TAC9 235 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 GPR152Q8TDT2 470 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 AUTS2Q8WXX7 1259 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 ELAC2Q9BQ52 826 aaKnown RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 DHX35Q9H5Z1 703 aaKnown RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 PCDH9Q9HC56 1237 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 DMAP1Q9NPF5 467 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-230ENST00000488543 KLC4Q9NSK0 619 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 ANAPC5Q9UJX4 755 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 FZD10Q9ULW2 581 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 SLC27A5Q9Y2P5 690 aa12.6□□□□□ -0.39
HDAC6-230ENST00000488543 CCDC85CA6NKD9 419 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 DNALI1O14645 258 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 ZBED1O96006 694 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 VIMP08670 466 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 NUDT17P0C025 328 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CAV1Q03135 178 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 IFRD2Q12894 506 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 MAPRE1Q15691 268 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 DDR2Q16832 855 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 P3H1Q32P28 736 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 GKAP1Q5VSY0 366 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 PM20D1Q6GTS8 502 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 SPRED2Q7Z698 418 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 YTHDF3Q7Z739 585 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 FAM131BQ86XD5 332 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 UNC45BQ8IWX7 931 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF558Q96NG5 402 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF317Q96PQ6 595 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 MAK16Q9BXY0 300 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CRISPLD1Q9H336 500 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CDY1Q9Y6F8 540 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 USP3Q9Y6I4 520 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 MYO16Q9Y6X6 1858 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 C5orf60A6NFR6 353 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 SGK1O00141 431 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CSPG5O95196 566 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 LTFP02788 710 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 RARGP13631 454 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 RDXP35241 583 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 GRIK1P39086 918 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 AUHQ13825 339 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 FAM133BQ5BKY9 247 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF280DQ6N043 979 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 RNF19BQ6ZMZ0 732 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 TAX1BP1Q86VP1 789 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CMTR2Q8IYT2 770 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 SLC39A11Q8N1S5 342 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 SCML4Q8N228 414 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 PYROXD2Q8N2H3 581 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 COLGALT1Q8NBJ5 622 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 BBOF1Q8ND07 529 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CCHCR1Q8TD31 782 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 ABHD8Q96I13 439 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 CDC42EP4Q9H3Q1 356 aaKnown RBP12.59□□□□□ -0.39
HDAC6-230ENST00000488543 PNPLA8Q9NP80 782 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 TMPRSS4Q9NRS4 437 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 PIGVQ9NUD9 493 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 STAP1Q9ULZ2 295 aa12.59□□□□□ -0.39
HDAC6-230ENST00000488543 M0QYT0 321 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 APOL1O14791 398 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 TBC1D4O60343 1298 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 VNN2O95498 520 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 LINC00271P0C7V0 271 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 CPB1P15086 417 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 TGM2P21980 687 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 DNAJB2P25686 324 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 MMP13P45452 471 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 EIF3BP55884 814 aaKnown RBP12.58□□□□□ -0.4
HDAC6-230ENST00000488543 GPS1Q13098 491 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms