RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NINJ2Q9NZG7 142 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 APOC4-APOC2K7ER74 178 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 KLHL2O95198 593 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 APOC2P02655 101 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 HSPA8P11142 646 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ETS1P14921 441 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 KCNA4P22459 653 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 IGFBP4P22692 258 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 NCALDP61601 193 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 SFSWAPQ12872 951 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 MTDHQ86UE4 582 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 CALML6Q8TD86 181 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 NUDT5Q9UKK9 219 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PCDHB5Q9Y5E4 795 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 UMODL1Q5DID0 1318 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 BAZ2AQ9UIF9 1905 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 GSTA4O15217 222 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 USP17L7P0C7H9 530 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 MYL2P10916 166 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 RBL1P28749 1068 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 EEF1DP29692 281 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 SKIV2L2P42285 1042 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 GEMP55040 296 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 TAS2R40P59535 323 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 IL1RL1Q01638 556 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 BMPR2Q13873 1038 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PTK6Q13882 451 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 THEMIS2Q5TEJ8 643 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 FAM183BPQ6ZVS7 135 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 RAB42Q8N4Z0 105 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 TSPAN17Q96FV3 270 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PPP1R2P1Q96PQ5 205 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 NAT9Q9BTE0 207 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 NXF3Q9H4D5 531 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ADA2Q9NZK5 511 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 GNGT2O14610 69 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 C4BPAP04003 597 aaKnown RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 MYL4P12829 197 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 MMP13P45452 471 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CPA2P48052 419 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CCL23P55773 120 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 MTFR1Q15390 333 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 TRADDQ15628 312 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 RNF43Q68DV7 783 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 NECAB2Q7Z6G3 386 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 SLC26A11Q86WA9 606 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 BLOC1S5Q8TDH9 187 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 C7orf43Q8WVR3 580 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 LZICQ8WZA0 190 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 LPPQ93052 612 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 FAM210AQ96ND0 272 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 TRAPPC9Q96Q05 1148 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 ZBTB18Q99592 522 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 MYLK2Q9H1R3 596 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC40Q9H9A6 602 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 DMAP1Q9NPF5 467 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 RHBDL2Q9NX52 303 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF536O15090 1300 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 F5H5T6 163 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CCR1P32246 355 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 PEX5P50542 639 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 DRG2P55039 364 aaKnown RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 PIGZQ86VD9 579 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CXorf38Q8TB03 319 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 RMDN2Q96LZ7 410 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 SAR1AQ9NR31 198 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 OLA1Q9NTK5 396 aaKnown RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 NSMCE4AQ9NXX6 385 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 SLC24A2Q9UI40 661 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 ZMYM2Q9UBW7 1377 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 WFS1O76024 890 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 LTFP02788 710 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 ELNP15502 786 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 ATP6V1C1P21283 382 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 TRMT5Q32P41 509 aaKnown RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 WLSQ5T9L3 541 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 IZUMO2Q6UXV1 221 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CCNJLQ8IV13 435 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC15Q8TF66 581 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 HTR3CQ8WXA8 447 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 TMEM237Q96Q45 408 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 RBPJLQ9UBG7 517 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 AAR2Q9Y312 384 aaKnown RBP11.32□□□□□ -0.6
HDAC6-228ENST00000486227 IPPQ9Y573 584 aa11.32□□□□□ -0.6
HDAC6-228ENST00000486227 CNTNAP1P78357 1384 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 A0A0G2JLL6 359 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 DHX15O43143 795 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 B4GALT4O60513 344 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 SHBGP04278 402 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 EEF1B2P24534 225 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ADSSP30520 456 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 GRM5P41594 1212 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 ZNF143P52747 638 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 MRPS6P82932 125 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 AUHQ13825 339 aaKnown RBP11.31□□□□□ -0.6
HDAC6-228ENST00000486227 IMPG1Q17R60 797 aa11.31□□□□□ -0.6
HDAC6-228ENST00000486227 SLC44A4Q53GD3 710 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms