RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NUDT18Q6ZVK8 323 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 SYT13Q7L8C5 426 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 WDR5BQ86VZ2 330 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 KCNV2Q8TDN2 545 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 CTNNBL1Q8WYA6 563 aaPredicted RBP17.78■□□□□ 0.44
VIM-205ENST00000485947 VCPIP1Q96JH7 1222 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 ZSWIM1Q9BR11 485 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 TAS2R14Q9NYV8 317 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 MYO1AQ9UBC5 1043 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 DNMT3LQ9UJW3 386 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 LSM7Q9UK45 103 aaKnown RBP17.78■□□□□ 0.44
VIM-205ENST00000485947 SMG5Q9UPR3 1016 aaKnown RBP17.78■□□□□ 0.44
VIM-205ENST00000485947 OTOGLQ3ZCN5 2332 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 HELZP42694 1942 aaKnown RBP17.78■□□□□ 0.44
VIM-205ENST00000485947 SPTBN2O15020 2390 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 A0A0A6YYK5 440 aaPredicted RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 RCCD1A6NED2 376 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 RNF40O75150 1001 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 FTLP02792 175 aaPredicted RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 SETSIPP0DME0 302 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 MYBL1P10243 752 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 OPRD1P41143 372 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 BCAT1P54687 386 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 GALCP54803 685 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 NAA35Q5VZE5 725 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 LAIR1Q6GTX8 287 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 RHBDF2Q6PJF5 856 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 GPRIN1Q7Z2K8 1008 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 PHF13Q86YI8 300 aaPredicted RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 MSANTD4Q8NCY6 345 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 CALR3Q96L12 384 aaKnown RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 PNKPQ96T60 521 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 KLF16Q9BXK1 252 aaPredicted RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 LACRTQ9GZZ8 138 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 FBRSL1Q9HCM7 1045 aaKnown RBP17.77■□□□□ 0.44
VIM-205ENST00000485947 LZTFL1Q9NQ48 299 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.77■□□□□ 0.44
VIM-205ENST00000485947 HESX1Q9UBX0 185 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 ZNF510Q9Y2H8 683 aa17.77■□□□□ 0.44
VIM-205ENST00000485947 TMCO5BA8MYB1 307 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 M0QYV0 167 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 XPO1O14980 1071 aaKnown RBP17.76■□□□□ 0.43
VIM-205ENST00000485947 HOXC11O43248 304 aaPredicted RBP17.76■□□□□ 0.43
VIM-205ENST00000485947 LRP3O75074 770 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 ADH5P11766 374 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 MRPS21P82921 87 aaKnown RBP17.76■□□□□ 0.43
VIM-205ENST00000485947 COG7P83436 770 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 GAB4Q2WGN9 574 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 BTBD8Q5XKL5 378 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 NYAP1Q6ZVC0 841 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 SCML4Q8N228 414 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 RNF10Q8N5U6 811 aaKnown RBP17.76■□□□□ 0.43
VIM-205ENST00000485947 PACSIN1Q9BY11 444 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 NCDNQ9UBB6 729 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 EBF1Q9UH73 591 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 GMEB2Q9UKD1 530 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 TSPAN16Q9UKR8 245 aa17.76■□□□□ 0.43
VIM-205ENST00000485947 A0A0U1RQJ8 604 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 KIF5CO60282 957 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 FOXD2O60548 495 aaPredicted RBP17.75■□□□□ 0.43
VIM-205ENST00000485947 RARGP13631 454 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 GRIA2P42262 883 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 TNFRSF4P43489 277 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 C1QBPQ07021 282 aaKnown RBP17.75■□□□□ 0.43
VIM-205ENST00000485947 BST2Q10589 180 aaKnown RBP17.75■□□□□ 0.43
VIM-205ENST00000485947 TCEAL1Q15170 157 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 IFI16Q16666 785 aaKnown RBP17.75■□□□□ 0.43
VIM-205ENST00000485947 GOLGA7BQ2TAP0 167 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 PM20D1Q6GTS8 502 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 DENND1BQ6P3S1 775 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 MON1BQ7L1V2 547 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 DGLUCYQ7Z3D6 616 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 PIGZQ86VD9 579 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 PASD1Q8IV76 773 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 RHOT2Q8IXI1 618 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 MCOLN2Q8IZK6 566 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 KCTD13Q8WZ19 329 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 RFFLQ8WZ73 363 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 NOX5Q96PH1 765 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 HINFPQ9BQA5 517 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 MIS12Q9H081 205 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 WDR35Q9P2L0 1181 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 GUCA1BQ9UMX6 200 aa17.75■□□□□ 0.43
VIM-205ENST00000485947 ZFHX4Q86UP3 3567 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 A0A1W2PQH9 124 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 APODP05090 189 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 CALB1P05937 261 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 RETP07949 1114 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 SDHBP21912 280 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 MMP8P22894 467 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 GPD2P43304 727 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 FNTBP49356 437 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 SIM2Q14190 667 aaPredicted RBP17.74■□□□□ 0.43
VIM-205ENST00000485947 PKDCCQ504Y2 493 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 C10orf120Q5SQS8 335 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 LY6G5CQ5SRR4 150 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 C1orf131Q8NDD1 294 aaKnown RBP17.74■□□□□ 0.43
VIM-205ENST00000485947 USP33Q8TEY7 942 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 CPA5Q8WXQ8 436 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 ZNF653Q96CK0 615 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms