RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RAB23Q9ULC3 237 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 LUC7L2Q9Y383 392 aaKnown RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 HBS1LQ9Y450 684 aaKnown RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 MAP4K5Q9Y4K4 846 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 USP3Q9Y6I4 520 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 TTC28Q96AY4 2481 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 A0A1W2PQC6 194 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 YJEFN3A6XGL0 299 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 HHLA1C9JL84 531 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 E7ENQ6 273 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ALDH1A2O94788 518 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 MOCS3O95396 460 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 TBX18O95935 607 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 GLI1P08151 1106 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ZDHHC11BP0C7U3 371 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 TCF3P15923 654 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ZNF18P17022 549 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 GPD2P43304 727 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 SULT1E1P49888 294 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 CCR3P51677 355 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 NRLP54845 237 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 SEC13P55735 322 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 YWHAZP63104 245 aaKnown RBP8.37□□□□□ -1.07
USP40-216ENST00000485943 CDR2Q01850 454 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 CDH18Q13634 790 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 NCAPHQ15003 741 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 DHCR24Q15392 516 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ARL13BQ3SXY8 428 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 MPPE1Q53F39 396 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 PM20D1Q6GTS8 502 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 DNAJC24Q6P3W2 148 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 LIAT1Q6ZQX7 453 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 TRMT11Q7Z4G4 463 aaKnown RBP8.37□□□□□ -1.07
USP40-216ENST00000485943 CHSY1Q86X52 802 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 BBS7Q8IWZ6 715 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 PGBD3Q8N328 593 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 KIAA1958Q8N8K9 716 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 CPA5Q8WXQ8 436 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ASIC4Q96FT7 647 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 PNKPQ96T60 521 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 C11orf70Q9BRQ4 267 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 OSBPL6Q9BZF3 934 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 KCNH6Q9H252 994 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 SIX2Q9NPC8 291 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ACP6Q9NPH0 428 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ARHGEF4Q9NR80 690 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 SPHK2Q9NRA0 654 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 DNAJC17Q9NVM6 304 aaKnown RBP8.37□□□□□ -1.07
USP40-216ENST00000485943 TMEM51Q9NW97 253 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 DDIT4Q9NX09 232 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 RRN3Q9NYV6 651 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP40-216ENST00000485943 IL37Q9NZH6 218 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 ADAM22Q9P0K1 906 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 BCCIPQ9P287 314 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP40-216ENST00000485943 MYO6Q9UM54 1294 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 CNTN6Q9UQ52 1028 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 PCDHB11Q9Y5F2 797 aa8.37□□□□□ -1.07
USP40-216ENST00000485943 BZW2Q9Y6E2 419 aaKnown RBP8.37□□□□□ -1.07
USP40-216ENST00000485943 A0A1B0GTH6 734 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 FAM92AA1XBS5 289 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 LRRC10BA6NIK2 292 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 LRRC53A6NM62 1247 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TMCO5BA8MYB1 307 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 F5H5T6 163 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 M0QYT0 321 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TEX33O43247 280 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 MSI1O43347 362 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 TSPAN3O60637 253 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 STC2O76061 302 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 IPO7O95373 1038 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 F9P00740 461 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TYRP14679 529 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 SDC4P31431 198 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 CCR1P32246 355 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 GJA4P35212 333 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 CXCL12P48061 93 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 DGKGP49619 791 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 MLLT6P55198 1093 aaPredicted RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 SLC6A3Q01959 620 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 DEUP1Q05D60 604 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 IQCB1Q15051 598 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TRIP4Q15650 581 aaPredicted RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 ODF2Q5BJF6 829 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 RABGAP1LQ5R372 815 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 LY6G5CQ5SRR4 150 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 ZFYVE27Q5T4F4 411 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 RNF219Q5W0B1 726 aaPredicted RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 LRRC31Q6UY01 552 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 FAM183BPQ6ZVS7 135 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 HTR3DQ70Z44 454 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 ZNF354CQ86Y25 554 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 SCML4Q8N228 414 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 SYNPOQ8N3V7 929 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 DTWD2Q8NBA8 298 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 CLEC4CQ8WTT0 213 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 ATRIPQ8WXE1 791 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 ANP32BQ92688 251 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 RSPRY1Q96DX4 576 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 FAM122AQ96E09 287 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms