RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 BCAR3O75815 825 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 SLC3A2P08195 630 aaKnown RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 SFPQP23246 707 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP40-213ENST00000483216 TACR3P29371 465 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 PDIA3P30101 505 aaKnown RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 HOXD12P35452 270 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 GALNT1Q10472 559 aaPredicted RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 GAB1Q13480 694 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 KPNB1Q14974 876 aaKnown RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 FAM110CQ1W6H9 321 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 GGT6Q6P531 493 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 C16orf89Q6UX73 402 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 KYAT3Q6YP21 454 aaKnown RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 NPIPB3Q92617 1050 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 FAR2Q96K12 515 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 PRSS22Q9GZN4 317 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 ARL8BQ9NVJ2 186 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 KLHL13Q9P2N7 655 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 HEMK1Q9Y5R4 338 aaPredicted RBP6.81□□□□□ -1.32
USP40-213ENST00000483216 MROH2BQ7Z745 1585 aa6.81□□□□□ -1.32
USP40-213ENST00000483216 COL3A1P02461 1466 aaPredicted RBP6.8□□□□□ -1.32
USP40-213ENST00000483216 LOC105369274A0A096LPK9 316 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 LOC102723532A0A0G2JNH3 316 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 DNAJC9-AS1A6NH13 148 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 PRYO14603 147 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 DNPH1O43598 174 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 CER1O95813 267 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 ATP5F1P24539 256 aaPredicted RBP6.8□□□□□ -1.32
USP40-213ENST00000483216 KLRK1P26718 216 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 NDUFS1P28331 727 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 CHAF1AQ13111 956 aaPredicted RBP6.8□□□□□ -1.32
USP40-213ENST00000483216 KRT72Q14CN4 511 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 MTX3Q5HYI7 312 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 MORN5Q5VZ52 161 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 ZNF626Q68DY1 528 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 LAS2Q8IYD9 372 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 OR4N4Q8N0Y3 316 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 POF1BQ8WVV4 589 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 ZNF845Q96IR2 970 aaPredicted RBP6.8□□□□□ -1.32
USP40-213ENST00000483216 RPS6KC1Q96S38 1066 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 KATNAL1Q9BW62 490 aa6.8□□□□□ -1.32
USP40-213ENST00000483216 TNFRSF6BO95407 300 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 SERPINF1P36955 418 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 AGTR2P50052 363 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 POLE2P56282 527 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 HSF1Q00613 529 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 BIRC2Q13490 618 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 TRIM60Q495X7 471 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 ZKSCAN2Q63HK3 967 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 ANO7Q6IWH7 933 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 ASB12Q8WXK4 309 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 MCRS1Q96EZ8 462 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 SENP7Q9BQF6 1050 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 ELOVL1Q9BW60 279 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 GATA5Q9BWX5 397 aaPredicted RBP6.79□□□□□ -1.32
USP40-213ENST00000483216 AGO4Q9HCK5 861 aaKnown RBP6.79□□□□□ -1.32
USP40-213ENST00000483216 ASNSD1Q9NWL6 643 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 BTBD3Q9Y2F9 522 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 PCDHB7Q9Y5E2 793 aa6.79□□□□□ -1.32
USP40-213ENST00000483216 SPATA31A5Q5VU36 1347 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 SPATA31A7Q8IWB4 1347 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 BAZ1AQ9NRL2 1556 aaPredicted RBP6.78□□□□□ -1.32
USP40-213ENST00000483216 RRHO14718 337 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 NKX2-8O15522 239 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 RPP40O75818 363 aaKnown RBP6.78□□□□□ -1.32
USP40-213ENST00000483216 CDK4P11802 303 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 SLC8A1P32418 973 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 ARHGAP25P42331 645 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 VPS41P49754 854 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 ZNF84P51523 738 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 GHRHRQ02643 423 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 AAK1Q2M2I8 961 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 TFAP2DQ7Z6R9 452 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 UBE2Q1Q7Z7E8 422 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 ENAHQ8N8S7 591 aaPredicted RBP6.78□□□□□ -1.32
USP40-213ENST00000483216 VPS37AQ8NEZ2 397 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 RMDN3Q96TC7 470 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 HERC5Q9UII4 1024 aaKnown RBP6.78□□□□□ -1.32
USP40-213ENST00000483216 ZBTB1Q9Y2K1 713 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 COMMD10Q9Y6G5 202 aa6.78□□□□□ -1.32
USP40-213ENST00000483216 E5RJQ4 531 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 TP73O15350 636 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 CSTBP04080 98 aaKnown RBP6.77□□□□□ -1.33
USP40-213ENST00000483216 ITGA2BP08514 1039 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 AKT1P31749 480 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 IDUAP35475 653 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 STAT6P42226 847 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 CFHR1Q03591 330 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 BLMHQ13867 455 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 GLE1Q53GS7 698 aaKnown RBP6.77□□□□□ -1.33
USP40-213ENST00000483216 WDR93Q6P2C0 686 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 SLC2A7Q6PXP3 512 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 CNGA4Q8IV77 575 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 ATG16L2Q8NAA4 619 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 CELF1Q92879 486 aaKnown RBP6.77□□□□□ -1.33
USP40-213ENST00000483216 FCRL5Q96RD9 977 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 TM2D2Q9BX73 214 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 PI4KBQ9UBF8 816 aa6.77□□□□□ -1.33
USP40-213ENST00000483216 SETD1BQ9UPS6 1966 aaKnown RBP6.77□□□□□ -1.33
USP40-213ENST00000483216 WDR91A4D1P6 747 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms