RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 FAM124AQ86V42 546 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 FMNL3Q8IVF7 1028 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 SIX6OS1Q8N1H7 587 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 CADM4Q8NFZ8 388 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 NDRG1Q92597 394 aaKnown RBP13.85□□□□□ -0.19
VCL-205ENST00000478896 TATDN2Q93075 761 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 PIWIL1Q96J94 861 aaKnown RBP13.85□□□□□ -0.19
VCL-205ENST00000478896 TSG101Q99816 390 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 SLC2A11Q9BYW1 496 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 SCAND2PQ9GZW5 306 aaPredicted RBP13.85□□□□□ -0.19
VCL-205ENST00000478896 GOLPH3LQ9H4A5 285 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 SFMBT1Q9UHJ3 866 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 CLEC4EQ9ULY5 219 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 NFE2L3Q9Y4A8 694 aa13.85□□□□□ -0.19
VCL-205ENST00000478896 A0A1W2PQ27 194 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 A0A1W2PQ64 194 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 SRRM3A6NNA2 597 aaPredicted RBP13.84□□□□□ -0.19
VCL-205ENST00000478896 TULP2O00295 520 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 BCAT2O15382 392 aaPredicted RBP13.84□□□□□ -0.19
VCL-205ENST00000478896 TSPAN3O60637 253 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 GJB3O75712 270 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 CER1O95813 267 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 HLA-EP13747 358 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 HOXD9P28356 352 aaPredicted RBP13.84□□□□□ -0.19
VCL-205ENST00000478896 COPAP53621 1224 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 ZNF445P59923 1031 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 PDE4CQ08493 712 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 CUL2Q13617 745 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 CBWD6Q4V339 395 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 FNDC3BQ53EP0 1204 aaKnown RBP13.84□□□□□ -0.19
VCL-205ENST00000478896 CBWD3Q5JTY5 395 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 CBWD5Q5RIA9 395 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 FAM217AQ8IXS0 508 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 DNASE2BQ8WZ79 361 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 EDEM1Q92611 657 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 NUP58Q9BVL2 599 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 RMND1Q9NWS8 449 aa13.84□□□□□ -0.19
VCL-205ENST00000478896 CACNA1EQ15878 2313 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 METTL12A8MUP2 240 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 TIMM44O43615 452 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 FTH1P19P0C7X4 201 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 MATKP42679 507 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 PNOCQ13519 176 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 TRIP4Q15650 581 aaPredicted RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 TMEM215Q68D42 235 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 PM20D1Q6GTS8 502 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 IL27RAQ6UWB1 636 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 CHST9Q7L1S5 443 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 OR2T3Q8NH03 318 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 WFIKKN2Q8TEU8 576 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 SETD7Q8WTS6 366 aaKnown RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 CYB5D2Q8WUJ1 264 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 LHX5Q9H2C1 402 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 GAREM1Q9H706 876 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 GDPD2Q9HCC8 539 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 EIF2B4Q9UI10 523 aaKnown RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 PLA2G4CQ9UP65 541 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 APOBEC2Q9Y235 224 aaKnown RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 ZDHHC9Q9Y397 364 aa13.83□□□□□ -0.2
VCL-205ENST00000478896 HBS1LQ9Y450 684 aaKnown RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 MUC22E2RYF6 1773 aaPredicted RBP13.83□□□□□ -0.2
VCL-205ENST00000478896 SLC16A3O15427 465 aaKnown RBP13.82□□□□□ -0.2
VCL-205ENST00000478896 MSI1O43347 362 aaKnown RBP13.82□□□□□ -0.2
VCL-205ENST00000478896 LCP1P13796 627 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 HLA-FP30511 346 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 LRMPQ12912 555 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 BSPRYQ5W0U4 402 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 RAB44Q7Z6P3 723 aaPredicted RBP13.82□□□□□ -0.2
VCL-205ENST00000478896 AHI1Q8N157 1196 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 ZNF366Q8N895 744 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 PNPLA1Q8N8W4 532 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 UBA3Q8TBC4 463 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 TMA16Q96EY4 203 aaKnown RBP13.82□□□□□ -0.2
VCL-205ENST00000478896 IL21RQ9HBE5 538 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 TM7SF3Q9NS93 570 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 ABCC13Q9NSE7 274 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 ABCB8Q9NUT2 735 aa13.82□□□□□ -0.2
VCL-205ENST00000478896 TYW5A2RUC4 315 aaKnown RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 YJEFN3A6XGL0 299 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 E7ENQ6 273 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 LATS1O95835 1130 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 IGLV3-19P01714 112 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 SETSIPP0DME0 302 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 VDRP11473 427 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 PABPC1P11940 636 aaKnown RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 TBXAS1P24557 533 aaPredicted RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 PRCPP42785 496 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 FKBP3Q00688 224 aaKnown RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 ZNF658Q5TYW1 1059 aaPredicted RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 BHLHA9Q7RTU4 235 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 RBBP8NLQ8NC74 664 aaPredicted RBP13.81□□□□□ -0.2
VCL-205ENST00000478896 ADAMTS14Q8WXS8 1223 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 GOLGA1Q92805 767 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 CNGB3Q9NQW8 809 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 GGA2Q9UJY4 613 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 PCOLCE2Q9UKZ9 415 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 CFAP47Q6ZTR5 3102 aa13.81□□□□□ -0.2
VCL-205ENST00000478896 TMEM131Q92545 1883 aa13.8□□□□□ -0.2
VCL-205ENST00000478896 TRIM49BA6NDI0 452 aa13.8□□□□□ -0.2
VCL-205ENST00000478896 O00370 1275 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms