RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ELF3P78545 371 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ADIGQ0VDE8 80 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 DPYSQ14117 519 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ZKSCAN8Q15776 578 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 CCL14Q16627 93 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 DBN1Q16643 649 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 HEATR6Q6AI08 1181 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 TIFABQ6ZNK6 161 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 LRRC6Q86X45 466 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 TCP10LQ8TDR4 215 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 RMDN2Q96LZ7 410 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ARHGEF4Q9NR80 690 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ARHGEF3Q9NR81 526 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 GIT1Q9Y2X7 761 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 M0QZ92 97 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 METTL18O95568 372 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 SERPINB9P50453 376 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 DNAJC3Q13217 504 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 SWT1Q5T5J6 900 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 WNT8BQ93098 351 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 LENG1Q96BZ8 264 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 FERMT1Q9BQL6 677 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 KRT37O76014 449 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 SNRPAP09012 282 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 PRKCZQ05513 592 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 MGAT3Q09327 533 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 INTS6LQ5JSJ4 861 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 TWF2Q6IBS0 349 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 RSPH3Q86UC2 560 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ANKLE1Q8NAG6 615 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 GSTCDQ8NEC7 633 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 RAB3IL1Q8TBN0 382 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 CCDC110Q8TBZ0 833 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 SENP6Q9GZR1 1112 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 BRD8Q9H0E9 1235 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 TSPYL2Q9H2G4 693 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ECT2Q9H8V3 914 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 GOLGA2P5Q9HBQ8 144 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 CNGB3Q9NQW8 809 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 CDH9Q9ULB4 789 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 C2CD2LO14523 706 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 LPXNO60711 386 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 STK10O94804 968 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FAM200BP0CF97 657 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 ALDH3A1P30838 453 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 ATXN1P54253 815 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FAAP100Q0VG06 881 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 SEMA3BQ13214 749 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FRG1Q14331 258 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 PDK1Q15118 436 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 STXBP5Q5T5C0 1151 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 LRRC8BQ6P9F7 803 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 RNF139Q8WU17 664 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 SERAC1Q96JX3 654 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 PAIP2Q9BPZ3 127 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 TXLNGQ9NUQ3 528 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FAM105AQ9NUU6 356 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 MOCS1Q9NZB8 636 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 PPP1R12AO14974 1030 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 APRTP07741 180 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 VAV1P15498 845 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 NQO1P15559 274 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 GOT1P17174 413 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 BEX3Q00994 111 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 CDK18Q07002 472 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FAM133BQ5BKY9 247 aaKnown RBP12.61□□□□□ -0.39
PTPRF-212ENST00000477970 ANKRD20A2Q5SQ80 823 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 ANKRD20A1Q5TYW2 823 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 ANKRD20A3Q5VUR7 823 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 FYB2Q5VWT5 728 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 UNC5AQ6ZN44 842 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 BEND5Q7L4P6 421 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 OTOAQ7RTW8 1153 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 IRGQQ8WZA9 623 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 NAT9Q9BTE0 207 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 LRRC4Q9HBW1 653 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 IGSF9Q9P2J2 1179 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 GABRQQ9UN88 632 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 CDY2AQ9Y6F7 541 aa12.61□□□□□ -0.39
PTPRF-212ENST00000477970 DCLK1O15075 740 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 CHUKO15111 745 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 AVILO75366 819 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 UNC5CO95185 931 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 ADRA1DP25100 572 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 DAOAP59103 153 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SETDB1Q15047 1291 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SNCBQ16143 134 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SEPT7Q16181 437 aaKnown RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 WSCD1Q658N2 575 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 PRPF39Q86UA1 669 aaKnown RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 TRIM42Q8IWZ5 723 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SENP8Q96LD8 212 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 CSNK1G1Q9HCP0 422 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 CRTAC1Q9NQ79 661 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 NCAM2O15394 837 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 HNRNPCL1O60812 293 aaKnown RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 AMPD1P23109 780 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 KIAA0319Q5VV43 1072 aa12.6□□□□□ -0.39
PTPRF-212ENST00000477970 MARK2Q7KZI7 788 aaKnown RBP12.6□□□□□ -0.39
PTPRF-212ENST00000477970 SIX6OS1Q8N1H7 587 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms