RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MED24O75448 989 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 CYBBP04839 570 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 IRF1P10914 325 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 GSPT1P15170 499 aaKnown RBP8.48□□□□□ -1.05
USP54-211ENST00000474929 YWHAQP27348 245 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 CDC25AP30304 524 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 CHKAP35790 457 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 USP46P62068 366 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 SEPT6Q14141 434 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 BMT2Q1RMZ1 405 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 ZCCHC8Q6NZY4 707 aaKnown RBP8.48□□□□□ -1.05
USP54-211ENST00000474929 FAM171BQ6P995 826 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 NCEH1Q6PIU2 408 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 DPH6Q7L8W6 267 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 ADGRF2Q8IZF7 708 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 FBXL16Q8N461 479 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 LRRC52Q8N7C0 313 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 WFIKKN2Q8TEU8 576 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 BRF1Q92994 677 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 FBXO32Q969P5 355 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 MYLPFQ96A32 169 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 TMEM159Q96B96 161 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 NTPCRQ9BSD7 190 aaKnown RBP8.48□□□□□ -1.05
USP54-211ENST00000474929 SLC2A11Q9BYW1 496 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 ELOVL4Q9GZR5 314 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 DPP3Q9NY33 737 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 L1RE1Q9UN81 338 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 PLA2G4CQ9UP65 541 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 ZNF510Q9Y2H8 683 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 CELSR1Q9NYQ6 3014 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 PDZD2O15018 2839 aa8.48□□□□□ -1.05
USP54-211ENST00000474929 A0A1W2PNU3 283 aaPredicted RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 A0A1W2PQ27 194 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 A0A1W2PQ64 194 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 A0A1W2PQC6 194 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 SDC3O75056 442 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 HIP1RO75146 1068 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 PENKP01210 267 aaPredicted RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 KRT7P08729 469 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 DGKAP23743 735 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 ACAT1P24752 427 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 ATP1A2P50993 1020 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GALCP54803 685 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 RPS14P62263 151 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 CYP27A1Q02318 531 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GEN1Q17RS7 908 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 TSGA10IPQ3SY00 556 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 FNDC3BQ53EP0 1204 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 RSRC2Q7L4I2 434 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 FAM114A1Q8IWE2 563 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GPBAR1Q8TDU6 330 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 HTR3CQ8WXA8 447 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 NANOS1Q8WY41 292 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 KCNN1Q92952 543 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GLMNQ92990 594 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 NAT6Q93015 286 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GTF3C6Q969F1 213 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 IFT43Q96FT9 208 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 APOLD1Q96LR9 279 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 SYT15Q9BQS2 421 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 PABPC3Q9H361 631 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 ANO2Q9NQ90 1003 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 GJB4Q9NTQ9 266 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 CPSF3Q9UKF6 684 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 R3HCC1Q9Y3T6 440 aaKnown RBP8.47□□□□□ -1.05
USP54-211ENST00000474929 HIVEP1P15822 2718 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 ATP8B3O60423 1300 aa8.47□□□□□ -1.05
USP54-211ENST00000474929 A0A087WWV3 80 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 F8VP50 259 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 GABRDO14764 452 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 CAPN5O15484 640 aaPredicted RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 FFAR2O15552 330 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 FAM189A1O60320 539 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 CDKL5O76039 1030 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 PIGRP01833 764 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 PRKCGP05129 697 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 JMJD7P0C870 316 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 MAPTP10636 758 aaKnown RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 BDNFP23560 247 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 RPIAP49247 311 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 ZNF177Q13360 481 aaPredicted RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 GNL2Q13823 731 aaKnown RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 SPIDRQ14159 915 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 FGL2Q14314 439 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 DHX8Q14562 1220 aaKnown RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 STAT4Q14765 748 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 PRPF39Q86UA1 669 aaKnown RBP8.46□□□□□ -1.06
USP54-211ENST00000474929 NUP93Q8N1F7 819 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 TMEM130Q8N3G9 435 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 FBXO39Q8N4B4 442 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 TEX19Q8NA77 164 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 TMEM161BQ8NDZ6 487 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 MSTO1Q9BUK6 570 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 B3GNT4Q9C0J1 378 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 OSBPL2Q9H1P3 480 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 COMMD8Q9NX08 183 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 FBXL12Q9NXK8 326 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 GDAP2Q9NXN4 497 aa8.46□□□□□ -1.06
USP54-211ENST00000474929 SUN2Q9UH99 717 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms