RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SYT12Q8IV01 421 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 UNC45BQ8IWX7 931 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 FRMD1Q8N878 549 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 MLKLQ8NB16 471 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 WFIKKN2Q8TEU8 576 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 FAM149B1Q96BN6 582 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 PIWIL1Q96J94 861 aaKnown RBP14.54□□□□□ -0.08
USP4-206ENST00000461553 CRACR2AQ9BSW2 395 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 TRIM62Q9BVG3 475 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 CIPCQ9C0C6 399 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 MIS12Q9H081 205 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 CD248Q9HCU0 757 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 THAP10Q9P2Z0 257 aaPredicted RBP14.54□□□□□ -0.08
USP4-206ENST00000461553 CYP8B1Q9UNU6 501 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 CNTN6Q9UQ52 1028 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 PCDH15Q96QU1 1955 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 TP53BP1Q12888 1972 aaPredicted RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 IGHV1OR15-9A0A0B4J2B8 117 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 TYW5A2RUC4 315 aaKnown RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 PATE3B3GLJ2 98 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 THAP12O43422 761 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 SYNCRIPO60506 623 aaKnown RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 TSPAN3O60637 253 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 LETM1O95202 739 aaPredicted RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 ADRB1P08588 477 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 NCAM1P13591 858 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 IL12RB1P42701 662 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 PTGER3P43115 390 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 ACADSBP45954 432 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 MTIF2P46199 727 aaKnown RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 SLC11A2P49281 568 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 LMAN2Q12907 356 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 TRIM61Q5EBN2 209 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 ADGRF1Q5T601 910 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 SERPINA13PQ6UXR4 307 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 MRGPRX1Q96LB2 322 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 SERPINB11Q96P15 392 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 NUSAP1Q9BXS6 441 aaKnown RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 CLSTN2Q9H4D0 955 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 TMEM9BQ9NQ34 198 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 APEX2Q9UBZ4 518 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 EVLQ9UI08 416 aaPredicted RBP14.53□□□□□ -0.08
USP4-206ENST00000461553 DACH1Q9UI36 760 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 STOML2Q9UJZ1 356 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 CHD8Q9HCK8 2581 aa14.53□□□□□ -0.08
USP4-206ENST00000461553 GTPBP10A4D1E9 387 aaKnown RBP14.52□□□□□ -0.09
USP4-206ENST00000461553 WASH3PC4AMC7 463 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 GABBR2O75899 941 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 IGLV3-27P01718 113 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 HOXD12P35452 270 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 ANP32AP39687 249 aaKnown RBP14.52□□□□□ -0.09
USP4-206ENST00000461553 USP8P40818 1118 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 GPD2P43304 727 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 TBX4P57082 545 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 RING1Q06587 406 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 NNTQ13423 1086 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 ZNF234Q14588 700 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 NUMA1Q14980 2115 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 ARHGAP44Q17R89 818 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 EXOC3L4Q17RC7 722 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 FUT11Q495W5 492 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 DAB2IPQ5VWQ8 1189 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 RABEPKQ7Z6M1 372 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 FAM114A1Q8IWE2 563 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 ZNF557Q8N988 423 aaPredicted RBP14.52□□□□□ -0.09
USP4-206ENST00000461553 DQX1Q8TE96 717 aaKnown RBP14.52□□□□□ -0.09
USP4-206ENST00000461553 DDX50Q9BQ39 737 aaKnown RBP14.52□□□□□ -0.09
USP4-206ENST00000461553 SLC6A17Q9H1V8 727 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 ELOVL2Q9NXB9 296 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 CLEC4EQ9ULY5 219 aa14.52□□□□□ -0.09
USP4-206ENST00000461553 C4orf47A7E2U8 309 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 CAPN9O14815 690 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 IRAK2O43187 625 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 NDUFS2O75306 463 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 CFIP05156 583 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 ITPKAP23677 461 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 HLA-FP30511 346 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 RPL34P49207 117 aaKnown RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 ZNF33AQ06730 810 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 ENPP2Q13822 863 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 PEAR1Q5VY43 1037 aaPredicted RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 DENND1BQ6P3S1 775 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 GJB7Q6PEY0 223 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 CHST9Q7L1S5 443 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 AHI1Q8N157 1196 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 HJURPQ8NCD3 748 aaPredicted RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 STK32AQ8WU08 396 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 TMA16Q96EY4 203 aaKnown RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 HSPA12BQ96MM6 686 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 LSM14BQ9BX40 385 aaKnown RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 IRX2Q9BZI1 471 aaPredicted RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 NUP62CLQ9H1M0 184 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 THAP9Q9H5L6 903 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 PRDM16Q9HAZ2 1276 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 ABCB8Q9NUT2 735 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 GGA2Q9UJY4 613 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 PILRBQ9UKJ0 227 aa14.51□□□□□ -0.09
USP4-206ENST00000461553 MAP1BP46821 2468 aaKnown RBP14.51□□□□□ -0.09
USP4-206ENST00000461553 E5RJQ4 531 aa14.5□□□□□ -0.09
USP4-206ENST00000461553 TIMM44O43615 452 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms