RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 XKR4Q5GH76 650 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 GRTP1Q5TC63 336 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 NCBP2-AS2Q69YL0 99 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 SCARA3Q6AZY7 606 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 ITPRIPL1Q6GPH6 555 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 CHADLQ6NUI6 762 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 DPY19L2Q6NUT2 758 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 KCNT2Q6UVM3 1135 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 LIMS2Q7Z4I7 341 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 NET1Q7Z628 596 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 IGDCC3Q8IVU1 814 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 NDUFAF2Q8N183 169 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 NME8Q8N427 588 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 GPATCH11Q8N954 259 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 STKLD1Q8NE28 680 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 RFWD2Q8NHY2 731 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 CNKSR2Q8WXI2 1034 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 NAF1Q96HR8 494 aaKnown RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 SIGLEC10Q96LC7 697 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 HNRNPABQ99729 332 aaKnown RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 CPNE1Q99829 537 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 MRPL45Q9BRJ2 306 aaKnown RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 KATNAL1Q9BW62 490 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 PPP1R12CQ9BZL4 782 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 VCX3BQ9H321 246 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 ADAMTS10Q9H324 1103 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 SLC38A7Q9NVC3 462 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 IGSF9Q9P2J2 1179 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 ZNF212Q9UDV6 495 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 TAGLN3Q9UI15 199 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 TRHDEQ9UKU6 1024 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 FZD10Q9ULW2 581 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 APOBEC2Q9Y235 224 aaKnown RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 HBS1LQ9Y450 684 aaKnown RBP9.12□□□□□ -0.95
HDAC3-202ENST00000459727 L3MBTL1Q9Y468 752 aa9.12□□□□□ -0.95
HDAC3-202ENST00000459727 ZNF236Q9UL36 1845 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 MBLAC1A4D2B0 266 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 HGSO14964 777 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 NVLO15381 856 aaKnown RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 GSC2O15499 205 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 FKBP6O75344 327 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 GRAP2O75791 330 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 RECQL4O94761 1208 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 F2P00734 622 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 F9P00740 461 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ZNF286BP0CG31 522 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 AOC1P19801 751 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SERPINB3P29508 390 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 PRDX6P30041 224 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 LRPAP1P30533 357 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 CYP2C18P33260 490 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 HTR7P34969 479 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SULT1E1P49888 294 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SERPINB8P50452 374 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 FKBP1BP68106 108 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 COG7P83436 770 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 NIPAL4Q0D2K0 466 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 BST1Q10588 318 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SCAPQ12770 1279 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 IFRD2Q12894 506 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 CHI3L2Q15782 390 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SOWAHAQ2M3V2 549 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 MUM1Q2TAK8 710 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 Q3C1V9 767 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 TEX44Q53QW1 395 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 LDLRAD1Q5T700 205 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SH3PXD2AQ5TCZ1 1133 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ALKAL1Q6UXT8 129 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ANKRD23Q86SG2 305 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SCUBE3Q8IX30 993 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ADGRF2Q8IZF7 708 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 KIRREL3Q8IZU9 778 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SIX6OS1Q8N1H7 587 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 TMEM86AQ8N2M4 240 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 C12orf29Q8N999 325 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ARMC2Q8NEN0 867 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 GABPB2Q8TAK5 448 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 JADE3Q92613 823 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 PTPRN2Q92932 1015 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 KHSRPQ92945 711 aaKnown RBP eCLIP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ISL2Q96A47 359 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 C18orf25Q96B23 403 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 MIEF2Q96C03 454 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 PARK7Q99497 189 aaKnown RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 KLF6Q99612 283 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 CCDC28BQ9BUN5 200 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 DUSP16Q9BY84 665 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 VCXQ9H320 206 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 C10orf88Q9H8K7 445 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 LRRC40Q9H9A6 602 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 LRRC4Q9HBW1 653 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 GPAMQ9HCL2 828 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 PDGFCQ9NRA1 345 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 FAM49BQ9NUQ9 324 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 DNAJC28Q9NX36 388 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 SNTG2Q9NY99 539 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 DONSONQ9NYP3 566 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 DTLQ9NZJ0 730 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 ZFATQ9P243 1243 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 STX18Q9P2W9 335 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms