RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 FAM72AQ5TYM5 149 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 CCSAPQ6IQ19 270 aaPredicted RBP14.11□□□□□ -0.15
CLK3-203ENST00000454830 FAM72DQ6L9T8 149 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 VSTM1Q6UX27 236 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 RFX8Q6ZV50 586 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 PDZD4Q76G19 769 aaPredicted RBP14.11□□□□□ -0.15
CLK3-203ENST00000454830 FAM72BQ86X60 149 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 GPR152Q8TDT2 470 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 CELF6Q96J87 481 aaKnown RBP14.11□□□□□ -0.15
CLK3-203ENST00000454830 CYTH2Q99418 400 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 FGFR1OP2Q9NVK5 253 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 RALGAPA2Q2PPJ7 1873 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 ARHGEF37A1IGU5 675 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 MYO1CO00159 1063 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 RNF103O00237 685 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 DDHD2O94830 711 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 KRT4P19013 534 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 GRK4P32298 578 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 CRADDP78560 199 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 DSC3Q14574 896 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 LIMS2Q7Z4I7 341 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 PDCD7Q8N8D1 485 aaKnown RBP14.11□□□□□ -0.15
CLK3-203ENST00000454830 ANKS4BQ8N8V4 417 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 COLGALT1Q8NBJ5 622 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 TRIM56Q9BRZ2 755 aaKnown RBP14.11□□□□□ -0.15
CLK3-203ENST00000454830 DNAJB4Q9UDY4 337 aa14.11□□□□□ -0.15
CLK3-203ENST00000454830 FAM47DPA6NHR8 397 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 NT5C1B-RDH14C9J2C7 533 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 PPP1R12AO14974 1030 aaPredicted RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 CHADO15335 359 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 UPP2O95045 317 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 GRIA1P42261 906 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 SARNPP82979 210 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 PDK1Q15118 436 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 KBTBD12Q3ZCT8 623 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ZNF354CQ86Y25 554 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 TGS1Q96RS0 853 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 EPAS1Q99814 870 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 COLEC11Q9BWP8 271 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MT-ND3P03897 115 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 CST5P28325 142 aaPredicted RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 PBX3P40426 434 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MPP2Q14168 576 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 SPARCL1Q14515 664 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ANKRD20A2Q5SQ80 823 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ANKRD20A1Q5TYW2 823 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ANKRD20A3Q5VUR7 823 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 C4orf50Q6ZRC1 276 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 RPAINQ86UA6 219 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 RELL1Q8IUW5 271 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MICALL1Q8N3F8 863 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 RIBC1Q8N443 379 aaPredicted RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 DBF4BQ8NFT6 615 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 USP33Q8TEY7 942 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ATXN2LQ8WWM7 1075 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 HHIPL1Q96JK4 782 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 RTP3Q9BQQ7 232 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 OR12D3Q9UGF7 316 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 SFMBT1Q9UHJ3 866 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 GGT7Q9UJ14 662 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MOXD2PA6NHM9 499 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 SMAPO00193 183 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MSI1O43347 362 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 CPB1P15086 417 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 NUMBP49757 651 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 IL9RQ01113 521 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 KCNJ11Q14654 390 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 MAPRE1Q15691 268 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 DDR2Q16832 855 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 FAM171A1Q5VUB5 890 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 RTN4RL1Q86UN2 441 aaPredicted RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 CCDC197Q8NCU1 140 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 P2RY11Q96G91 374 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 ALG13Q9NP73 1137 aaKnown RBP14.1□□□□□ -0.15
CLK3-203ENST00000454830 RABGEF1Q9UJ41 708 aa14.1□□□□□ -0.15
CLK3-203ENST00000454830 TTC3P53804 2025 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 FYNP06241 537 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 GATMP50440 423 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 PPP2R5DQ14738 602 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 TAC4Q86UU9 113 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 C11orf84Q9BUA3 381 aaPredicted RBP14.09□□□□□ -0.15
CLK3-203ENST00000454830 IQCGQ9H095 443 aaKnown RBP14.09□□□□□ -0.15
CLK3-203ENST00000454830 TBC1D13Q9NVG8 400 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 PCDHB7Q9Y5E2 793 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 PDE4DIPQ5VU43 2346 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 TCRBV9S1A1TA0A576 114 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 NR1H3Q13133 447 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 MBTPS1Q14703 1052 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 TRABD2AQ86V40 505 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 QKIQ96PU8 341 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLK3-203ENST00000454830 DFFAO00273 331 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 B4GALT3O60512 393 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 USP12O75317 370 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 VAV1P15498 845 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 DRD4P21917 467 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 CTXN3Q4LDR2 81 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 OTUD1Q5VV17 481 aaPredicted RBP14.09□□□□□ -0.15
CLK3-203ENST00000454830 LRRC8DQ7L1W4 858 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 ARCQ7LC44 396 aa14.09□□□□□ -0.15
CLK3-203ENST00000454830 DNAAF3Q8N9W5 541 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms