RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 PCDHB5Q9Y5E4 795 aa10.95□□□□□ -0.66
VIPAS39-203ENST00000448935 TTC3P53804 2025 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 SYNJ2BP-COX16A0A087WUM0 186 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 A0A087WUV0 522 aaPredicted RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 H7C4K7 107 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 EEF2KO00418 725 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CHADO15335 359 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 KCNN4O15554 427 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 B4GALT3O60512 393 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 TCEA3O75764 348 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 STK10O94804 968 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 TSHRP16473 764 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CAPN2P17655 700 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 BASP1P80723 227 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 NR1H3Q13133 447 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 HIF1AQ16665 826 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CTXN3Q4LDR2 81 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 SLC45A4Q5BKX6 768 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 VARS2Q5ST30 1063 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 BTBD8Q5XKL5 378 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 DESI1Q6ICB0 168 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 MFSD5Q6N075 450 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 LEKR1Q6ZMV7 388 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 ZNF771Q7L3S4 317 aaPredicted RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 BHLHA9Q7RTU4 235 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 PRUNE1Q86TP1 453 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 PDIK1LQ8N165 341 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 LRRC43Q8N309 656 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 NAT8LQ8N9F0 302 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CPT1BQ92523 772 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 C8orf48Q96LL4 319 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 TMEM209Q96SK2 561 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CAPS2Q9BXY5 557 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 KLC2Q9H0B6 622 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 WDCPQ9H6R7 721 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 CNOT10Q9H9A5 744 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 SAYSD1Q9NPB0 183 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 PIGVQ9NUD9 493 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 TMEM30AQ9NV96 361 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 NINJ2Q9NZG7 142 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 COX16Q9P0S2 106 aa10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 NOVA2Q9UNW9 492 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-203ENST00000448935 TLDC2A0PJX2 215 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 PPP1R12AO14974 1030 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 ALOX15BO15296 676 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 NCAM2O15394 837 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 SHOX2O60902 331 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 ACSL3O95573 720 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 SHBGP04278 402 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 GOT1P17174 413 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 FGFR3P22607 806 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 HTR7P34969 479 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 PHBP35232 272 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 RFC2P35250 354 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 CXCR3P49682 368 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 SLC5A3P53794 718 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 YWHAGP61981 247 aaKnown RBP eCLIP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 MRPL58Q14197 206 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 PDK1Q15118 436 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 KYNUQ16719 465 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 BRMS1LQ5PSV4 323 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 FAM171A1Q5VUB5 890 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 NCBP2-AS2Q69YL0 99 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 HEATR6Q6AI08 1181 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 TAOK1Q7L7X3 1001 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 RIBC1Q8N443 379 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 SH2D3CQ8N5H7 860 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 SPPL2BQ8TCT7 592 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 C2orf15Q8WU43 125 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 TFB1MQ8WVM0 346 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 QKIQ96PU8 341 aaKnown RBP eCLIP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 RHOBTB2Q9BYZ6 727 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 USP29Q9HBJ7 922 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 WDR6Q9NNW5 1121 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 ARHGEF4Q9NR80 690 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 COMMD8Q9NX08 183 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 ABI2Q9NYB9 513 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 CALCOCO1Q9P1Z2 691 aa10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 FNDC1Q4ZHG4 1894 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-203ENST00000448935 TBKBP1A7MCY6 615 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 F8W810 466 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 TNFRSF10BO14763 440 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 GCATO75600 419 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 MYCP01106 439 aaPredicted RBP10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 ATP2A2P16615 1042 aaKnown RBP10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 AMPD1P23109 780 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 RBL1P28749 1068 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 TPI1P60174 286 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 PPP2R2AP63151 447 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 PITX1P78337 314 aaPredicted RBP10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 CBLBQ13191 982 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 IKBKEQ14164 716 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 PAFAH1B3Q15102 231 aaKnown RBP10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 FUT10Q6P4F1 479 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 CNKSR3Q6P9H4 555 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 RFX8Q6ZV50 586 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 ANKS3Q6ZW76 656 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 SCN4BQ8IWT1 228 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 NUP93Q8N1F7 819 aa10.92□□□□□ -0.66
VIPAS39-203ENST00000448935 CRIPAKQ8N1N5 446 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms