RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 HSF5Q4G112 596 aaPredicted RBP16.52■□□□□ 0.24
SHQ1-202ENST00000444040 MROH9Q5TGP6 573 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 TIFABQ6ZNK6 161 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 ANKRD23Q86SG2 305 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 OSTM1Q86WC4 334 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 PSTKQ8IV42 348 aaKnown RBP16.52■□□□□ 0.24
SHQ1-202ENST00000444040 DNAJB3Q8WWF6 145 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 NT5C3BQ969T7 300 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 TUBB6Q9BUF5 446 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 RNPEPL1Q9HAU8 725 aa16.52■□□□□ 0.24
SHQ1-202ENST00000444040 RPL26L1Q9UNX3 145 aaKnown RBP16.52■□□□□ 0.24
SHQ1-202ENST00000444040 MFSD11O43934 449 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 MLNP12872 115 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 CRHR1P34998 444 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 FDFT1P37268 417 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 SULT1E1P49888 294 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 SERPINB9P50453 376 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 GTF2A2P52657 109 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 TEX44Q53QW1 395 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 WASHC2DQ5SRD0 308 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 ADGRF2Q8IZF7 708 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.52■□□□□ 0.23
SHQ1-202ENST00000444040 N4BP2L2Q92802 583 aaPredicted RBP16.52■□□□□ 0.23
SHQ1-202ENST00000444040 E2F7Q96AV8 911 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 HNRNPABQ99729 332 aaKnown RBP16.52■□□□□ 0.23
SHQ1-202ENST00000444040 CADM1Q9BY67 442 aaKnown RBP16.52■□□□□ 0.23
SHQ1-202ENST00000444040 PCMTD2Q9NV79 361 aa16.52■□□□□ 0.23
SHQ1-202ENST00000444040 PDCD11Q14690 1871 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 CCDC22O60826 627 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 YBX3P16989 372 aaKnown RBP eCLIP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 GNAZP19086 355 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 OCRLQ01968 901 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 ADIGQ0VDE8 80 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 TRIM42Q8IWZ5 723 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 HACE1Q8IYU2 909 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 UNC5BQ8IZJ1 945 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 NDUFAF2Q8N183 169 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 COLGALT1Q8NBJ5 622 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 B3GALNT2Q8NCR0 500 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 NSL1Q96IY1 281 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 TNIP3Q96KP6 325 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 MYCBPQ99417 103 aaPredicted RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 DUSP16Q9BY84 665 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 DENND2DQ9H6A0 471 aaPredicted RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 TMPRSS4Q9NRS4 437 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 GNEQ9Y223 722 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 WDR27A2RRH5 827 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 DAB1O75553 588 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 BEST1O76090 585 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 CALB2P22676 271 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 LILRA4P59901 499 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 SARNPP82979 210 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 KRT72Q14CN4 511 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 SV2CQ496J9 727 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 FAM91A1Q658Y4 838 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 BZW1Q7L1Q6 419 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 PLEKHH3Q7Z736 793 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 TTC7BQ86TV6 843 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 ARRDC4Q8NCT1 418 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 DEPDC1BQ8WUY9 529 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 TSPAN18Q96SJ8 248 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 BTBD10Q9BSF8 475 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 UNCXA6NJT0 531 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 XPOTO43592 962 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 WARSP23381 471 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 DCAF6Q58WW2 860 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 ATG16L1Q676U5 607 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 LRRC8BQ6P9F7 803 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 PAQR9Q6ZVX9 377 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 PDCD7Q8N8D1 485 aaKnown RBP16.51■□□□□ 0.23
SHQ1-202ENST00000444040 NETO2Q8NC67 525 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 ARNTL2Q8WYA1 636 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 FAM149B1Q96BN6 582 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 NPY6RQ99463 290 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 PRDM16Q9HAZ2 1276 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 KCNK4Q9NYG8 393 aa16.51■□□□□ 0.23
SHQ1-202ENST00000444040 F5H423 210 aaPredicted RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 HUS1O60921 280 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 CAPN15O75808 1086 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 GLUD2P49448 558 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 TMPRSS15P98073 1019 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 ZBTB16Q05516 673 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 NIPAL4Q0D2K0 466 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 CHI3L2Q15782 390 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 PRAMEF19Q5SWL8 479 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 ENDOVQ8N8Q3 282 aaKnown RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 RNF139Q8WU17 664 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 P2RY11Q96G91 374 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 ZNF570Q96NI8 536 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 ZNF395Q9H8N7 513 aaPredicted RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 EIF2B3Q9NR50 452 aaKnown RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 I3L4J1 428 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 CLDN5O00501 218 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 FCHO1O14526 889 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 SNNO75324 88 aaPredicted RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 TOP3BO95985 862 aaKnown RBP16.5■□□□□ 0.23
SHQ1-202ENST00000444040 BPGMP07738 259 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 TPBGLP0DKB5 382 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 CNTFP26441 200 aa16.5■□□□□ 0.23
SHQ1-202ENST00000444040 NOS2P35228 1153 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms