RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 BTBD8Q5XKL5 378 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 DENND5BQ6ZUT9 1274 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 HERVK_113Q902F9 699 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 SLC9A7Q96T83 725 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 MAK16Q9BXY0 300 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 EPB41L5Q9HCM4 733 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 ABCC13Q9NSE7 274 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 GPATCH2LQ9NWQ4 482 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 DDIT4Q9NX09 232 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 COX16Q9P0S2 106 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 RASAL2Q9UJF2 1139 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 ZMYND8Q9ULU4 1186 aaPredicted RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 ZNF510Q9Y2H8 683 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 TMEM98Q9Y2Y6 226 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 FAM187AA6NFU0 413 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 TUFMP49411 452 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 TFDP2Q14188 446 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 OTUD1Q5VV17 481 aaPredicted RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 TTC27Q6P3X3 843 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 BBS12Q6ZW61 710 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 BNIPLQ7Z465 357 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 MON1AQ86VX9 555 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 RFX6Q8HWS3 928 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 PSTKQ8IV42 348 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 HERC6Q8IVU3 1022 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 VPS52Q8N1B4 723 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 PHOSPHO2Q8TCD6 241 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 ATG4AQ8WYN0 398 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 SLC35B4Q969S0 331 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 PGAP3Q96FM1 320 aaPredicted RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 RAD9AQ99638 391 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 CLSTN3Q9BQT9 956 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 DCLK3Q9C098 648 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 RAB17Q9H0T7 212 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 CRISPLD1Q9H336 500 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 DHX35Q9H5Z1 703 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 PCDH18Q9HCL0 1135 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 DNAAF2Q9NVR5 837 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 AFF4Q9UHB7 1163 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 AP4E1Q9UPM8 1137 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 SCML2Q9UQR0 700 aa8.38□□□□□ -1.07
CCDC39-201ENST00000442201 R3HDM2Q9Y2K5 976 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 UTP11Q9Y3A2 253 aaKnown RBP8.38□□□□□ -1.07
CCDC39-201ENST00000442201 CST8O60676 142 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 SOAT2O75908 522 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 VNN2O95498 520 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 LINGO3P0C6S8 592 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 KCNJ1P48048 391 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ARSEP51690 589 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 DPYSL3Q14195 570 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 DPYSL2Q16555 572 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 PPP6R3Q5H9R7 873 aaPredicted RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 TPGS2Q68CL5 300 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 CCNI2Q6ZMN8 369 aaPredicted RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 SND1Q7KZF4 910 aaKnown RBP eCLIP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 TAX1BP1Q86VP1 789 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 VSIG1Q86XK7 387 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 JAMLQ86YT9 394 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ARHGAP18Q8N392 663 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 TTC13Q8NBP0 860 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 LSM14AQ8ND56 463 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ZNF461Q8TAF7 563 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ADAM32Q8TC27 787 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 SPATA17Q96L03 361 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 SH3GL2Q99962 352 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 MRPL17Q9NRX2 175 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 PIGVQ9NUD9 493 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 G3BP2Q9UN86 482 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ZSCAN5CA6NGD5 496 aaPredicted RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 FGF18O76093 207 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ATP2A2P16615 1042 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 YWHAQP27348 245 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GBP2P32456 591 aaPredicted RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 DYNLT1P63172 113 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 CA9Q16790 459 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 SCD5Q86SK9 330 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GPR65Q8IYL9 337 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 KIRREL3Q8IZU9 778 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 CCDC185Q8N715 623 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 KCNV2Q8TDN2 545 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GPR152Q8TDT2 470 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 DQX1Q8TE96 717 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GRK7Q8WTQ7 553 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 RNF139Q8WU17 664 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 CCDC114Q96M63 670 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 CEP295NLQ96MC4 621 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ZNF670Q9BS34 389 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GDF3Q9NR23 364 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 PAPOLBQ9NRJ5 636 aaKnown RBP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.37□□□□□ -1.07
CCDC39-201ENST00000442201 IL37Q9NZH6 218 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ESYT3A0FGR9 886 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 ZNF487B1APH4 448 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 TLL1O43897 1013 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GAS8O95995 478 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 DNAJB2P25686 324 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 GBP1P32455 592 aa8.37□□□□□ -1.07
CCDC39-201ENST00000442201 AIF1P55008 147 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms