RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RPP40O75818 363 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 GFPT2O94808 682 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 LSM8O95777 96 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 TRUB2O95900 331 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 APOEP02649 317 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ERBB2P04626 1255 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 CHRM1P11229 460 aaPredicted RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ATP1A3P13637 1013 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 CDH5P33151 784 aaPredicted RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 SOX5P35711 763 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 STAT1P42224 750 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 CDK17Q00537 523 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 TAF5Q15542 800 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 LPAL2Q16609 132 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 PTPN20Q4JDL3 420 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 DCAF6Q58WW2 860 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 FAM183BPQ6ZVS7 135 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 APTXQ7Z2E3 356 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 NOP9Q86U38 636 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF677Q86XU0 584 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ZDHHC17Q8IUH5 632 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 DHX40Q8IX18 779 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 DEFB106AQ8N104 65 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 MSANTD4Q8NCY6 345 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 GAB3Q8WWW8 586 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 DDX1Q92499 740 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 P2RY11Q96G91 374 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 PIWIL1Q96J94 861 aaKnown RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 FCRL2Q96LA5 508 aaPredicted RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ERGIC2Q96RQ1 377 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 IRX2Q9BZI1 471 aaPredicted RBP15.8■□□□□ 0.12
LIMS3-201ENST00000437679 GMEB2Q9UKD1 530 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 SDK1Q7Z5N4 2213 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 SYCE3A1L190 88 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 PRRT4C9JH25 899 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 EPHB6O15197 1021 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 IRAK2O43187 625 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 ADAM23O75077 832 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 GRAP2O75791 330 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 NTSR1P30989 418 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 GBP1P32455 592 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 JAM2P57087 298 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 SLC6A3Q01959 620 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 E2F5Q15329 346 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 FILIP1LQ4L180 1135 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 EGFLAMQ63HQ2 1017 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 LAIR1Q6GTX8 287 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 ANO7Q6IWH7 933 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 OLFML1Q6UWY5 402 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 TMEM92Q6UXU6 159 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 ANKS1BQ7Z6G8 1248 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 ERICH1Q86X53 443 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 CHPFQ8IZ52 775 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 EPS8L1Q8TE68 723 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 UCMAQ8WVF2 138 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 C18orf8Q96DM3 657 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 SLC39A13Q96H72 371 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 SLC2A13Q96QE2 648 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 FAM204AQ9H8W3 233 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 SLC12A6Q9UHW9 1150 aa15.79■□□□□ 0.12
LIMS3-201ENST00000437679 GOLGA6L7A0A1B0GV03 622 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 TYW5A2RUC4 315 aaKnown RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 MOCS2O96007 188 aaPredicted RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 MMEP08473 750 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 HOXD9P28356 352 aaPredicted RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 WASP42768 502 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 USP39Q53GS9 565 aaKnown RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 FAM133BQ5BKY9 247 aaKnown RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 ZC3H12AQ5D1E8 599 aaKnown RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 PIK3R6Q5UE93 754 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 RFWD3Q6PCD5 774 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 SLC26A9Q7LBE3 791 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 CACNA2D4Q7Z3S7 1137 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF397Q8NF99 534 aaPredicted RBP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 RNF34Q969K3 372 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 FUCA2Q9BTY2 467 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 DDIT4Q9NX09 232 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 BCCIPQ9P287 314 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIMS3-201ENST00000437679 CLEC4EQ9ULY5 219 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 WDR87Q6ZQQ6 2873 aa15.78■□□□□ 0.12
LIMS3-201ENST00000437679 EML5Q05BV3 1969 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 TCRBV21S2A2A0A5A6 115 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 GFRA2O00451 464 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NPC1O15118 1278 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 ZBTB24O43167 697 aaPredicted RBP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 TBL1XO60907 577 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 DAB1O75553 588 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 IGLV3-25P01717 112 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 SLC2A3P11169 496 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 HOXB2P14652 356 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 HNRNPLP14866 589 aaKnown RBP eCLIP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 SLC6A4P31645 630 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NOS2P35228 1153 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 GABRB2P47870 512 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 TPM4P67936 248 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NOMO3P69849 1222 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 CDR2Q01850 454 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 ARID5AQ03989 594 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms