RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MICAL2O94851 1124 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 CNPP09543 421 aaKnown RBP15.77■□□□□ 0.12
PTPRF-206ENST00000429895 IL5RAQ01344 420 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 KCNMA1Q12791 1236 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 NFE2Q16621 373 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-206ENST00000429895 ZDHHC15Q96MV8 337 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 XPNPEP3Q9NQH7 507 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 KLHL28Q9NXS3 571 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 KPNA3O00505 521 aaPredicted RBP15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PSMC3P17980 439 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PTPN3P26045 913 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PEX5P50542 639 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 RENBPP51606 427 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PGM5Q15124 567 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 HEATR4Q86WZ0 1026 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 CLYBLQ8N0X4 340 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 EXD1Q8NHP7 514 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 MRPL48Q96GC5 212 aaKnown RBP15.77■□□□□ 0.11
PTPRF-206ENST00000429895 BBS4Q96RK4 519 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 ARMC7Q9H6L4 198 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 TSC22D4Q9Y3Q8 395 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 TRIM66O15016 1216 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 SERPINF2P08697 491 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PPP1R13LQ8WUF5 828 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 PHACTR1Q9C0D0 580 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 KLHL1Q9NR64 748 aa15.77■□□□□ 0.11
PTPRF-206ENST00000429895 CCDC130P13994 396 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 PPP4CP60510 307 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 Q4G0T1 1027 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ZNF518BQ9C0D4 1074 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 PABPC3Q9H361 631 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 WHRNQ9P202 907 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 PRKAG3Q9UGI9 489 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 NUDT5Q9UKK9 219 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 FAM220BPB1ANY3 271 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 CAPN15O75808 1086 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ATAD3BQ5T9A4 648 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 SYTL5Q8TDW5 730 aaPredicted RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ADI1Q9BV57 179 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 HDHD2Q9H0R4 259 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ZDHHC6Q9H6R6 413 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 AHSPQ9NZD4 102 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 TRIM17Q9Y577 477 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 KPNA6O60684 536 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 IRAK1P51617 712 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 TRIM16LQ309B1 348 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 RETSATQ6NUM9 610 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ZNF544Q6NX49 715 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 CYP20A1Q6UW02 462 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 FAM9CQ8IZT9 166 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 CDC42EP4Q9H3Q1 356 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 FBXO44Q9H4M3 255 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 DUSP12Q9UNI6 340 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 C1orf167Q5SNV9 1468 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 FAM20BO75063 409 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 SEC22BO75396 215 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 MTA2O94776 668 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 TMED10P49755 219 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 RAB14P61106 215 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 HERVK_113P62684 666 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 ELAVL2Q12926 359 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 NOL9Q5SY16 702 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 MTDHQ86UE4 582 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 TLK2Q86UE8 772 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 PALB2Q86YC2 1186 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 AVENQ9NQS1 362 aaPredicted RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 CHURC1-FNTBB4DL54 471 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 UBDO15205 165 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 NKRFO15226 690 aaKnown RBP eCLIP15.76■□□□□ 0.112e-6■■■■□ 21.8
PTPRF-206ENST00000429895 CNOT3O75175 753 aaKnown RBP15.76■□□□□ 0.11
PTPRF-206ENST00000429895 AMPD1P23109 780 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 REXO1L1PQ8IX06 675 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 NCKIPSDQ9NZQ3 722 aa15.76■□□□□ 0.11
PTPRF-206ENST00000429895 PIPSLA2A3N6 862 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 POM121L1PQ3SYA9 428 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 NEK10Q6ZWH5 1172 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 ZNF720Q7Z2F6 126 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 FNDC5Q8NAU1 212 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 CLTCL1P53675 1640 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 ADM5C9JUS6 153 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SCAMP3O14828 347 aaKnown RBP15.75■□□□□ 0.11
PTPRF-206ENST00000429895 PROSCO94903 275 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 TYMPP19971 482 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 MGAT1P26572 445 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 PKN2Q16513 984 aaKnown RBP15.75■□□□□ 0.11
PTPRF-206ENST00000429895 C11orf88Q6PI97 169 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 TMEM26Q6ZUK4 368 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SLC26A11Q86WA9 606 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 RNFT2Q96EX2 444 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 BARX2Q9UMQ3 279 aaPredicted RBP15.75■□□□□ 0.11
PTPRF-206ENST00000429895 RAD51BO15315 384 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 FMO4P31512 558 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 TROAPQ12815 778 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 COX10Q12887 443 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 FGD3Q5JSP0 725 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SLC22A9Q8IVM8 553 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SCUBE3Q8IX30 993 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SMARCD1Q96GM5 515 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 PDLIM2Q96JY6 352 aa15.75■□□□□ 0.11
PTPRF-206ENST00000429895 SPRTNQ9H040 489 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms