RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 OGDHQ02218 1023 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 DLX2Q07687 328 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 RABGAP1LQ5R372 815 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CCDC181Q5TID7 509 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 NPAS3Q8IXF0 933 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 RCOR2Q8IZ40 523 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 SLC35F6Q8N357 371 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 KIAA1958Q8N8K9 716 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 KIF18AQ8NI77 898 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 ZNF592Q92610 1267 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 AZIN2Q96A70 460 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 NAP1L3Q99457 506 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 KLF16Q9BXK1 252 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 RNF38Q9H0F5 515 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 SIK2Q9H0K1 926 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 OBP2AQ9NY56 170 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CFAP97Q9P2B7 532 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 DNAI1Q9UI46 699 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 SALL4Q9UJQ4 1053 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 AP4E1Q9UPM8 1137 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 LRRD1A4D1F6 860 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 H3BRJ5 948 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 LEFTY2O00292 366 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 OLFM2O95897 454 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 IGLV3-25P01717 112 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 KRT1P04264 644 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CTNNA2P26232 953 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CORO1AP31146 461 aaKnown RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 CTNNA1P35221 906 aaKnown RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 LTBRP36941 435 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 IFNAR2P48551 515 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 DNA2P51530 1060 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CDH6P55285 790 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 NR1H3Q13133 447 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 PPP6R3Q5H9R7 873 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 MEI1Q5TIA1 1274 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 NT5DC3Q86UY8 548 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 DENND1CQ8IV53 801 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 ZNF557Q8N988 423 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 LRRC57Q8N9N7 239 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 SH3RF2Q8TEC5 729 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 MAIP1Q8WWC4 291 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 OTUB2Q96DC9 234 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 PBKQ96KB5 322 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CALN1Q9BXU9 219 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CATSPERBQ9H7T0 1116 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 PRDM16Q9HAZ2 1276 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.47□□□□□ -0.73
CD44-207ENST00000425428 ARHGEF38Q9NXL2 777 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 PCDHA3Q9Y5H8 950 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 A0A0U1RQJ8 604 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 KCNK3O14649 394 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 MBTPS2O43462 519 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 CREB3O43889 395 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 ACSL4O60488 711 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 STC2O76061 302 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 TCP1P17987 556 aaKnown RBP10.46□□□□□ -0.74
CD44-207ENST00000425428 PGFP49763 221 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 TPI1P60174 286 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 COPS2P61201 443 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 ZNF252P-AS1Q0IIN9 211 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 SCAPQ12770 1279 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 SMTNL2Q2TAL5 461 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 LEXMQ3ZCV2 418 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 STXBP5Q5T5C0 1151 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 ADGRF1Q5T601 910 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 SH3PXD2AQ5TCZ1 1133 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 TTC39BQ5VTQ0 682 aaPredicted RBP10.46□□□□□ -0.74
CD44-207ENST00000425428 TRNP1Q6NT89 227 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 CHSY1Q86X52 802 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 KATNAL2Q8IYT4 538 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 C17orf53Q8N3J3 647 aaPredicted RBP10.46□□□□□ -0.74
CD44-207ENST00000425428 EXD1Q8NHP7 514 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 BPIFB1Q8TDL5 484 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 DEPDC1BQ8WUY9 529 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 ATRIPQ8WXE1 791 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 NXPE3Q969Y0 559 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 EXOC4Q96A65 974 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 FCRL2Q96LA5 508 aaPredicted RBP10.46□□□□□ -0.74
CD44-207ENST00000425428 C1orf74Q96LT6 269 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 IRX2Q9BZI1 471 aaPredicted RBP10.46□□□□□ -0.74
CD44-207ENST00000425428 OSBPL2Q9H1P3 480 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 POMKQ9H5K3 350 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 GKN1Q9NS71 199 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 OR12D3Q9UGF7 316 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 FZD10Q9ULW2 581 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 HYOU1Q9Y4L1 999 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 BRWD1Q9NSI6 2320 aa10.46□□□□□ -0.74
CD44-207ENST00000425428 EEF2KO00418 725 aaKnown RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 SRGAP2O75044 1071 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 MOSPD3O75425 235 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 PAGE1O75459 146 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 RARAP10276 462 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 LAMP2P13473 410 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 TCF3P15923 654 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 ZFXP17010 805 aaPredicted RBP10.45□□□□□ -0.74
CD44-207ENST00000425428 PAFAH1B1P43034 410 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 AMPD2Q01433 879 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 TUBB2AQ13885 445 aa10.45□□□□□ -0.74
CD44-207ENST00000425428 TFDP2Q14188 446 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms