RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SPIRE1Q08AE8 756 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 MAPRE1Q15691 268 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 DGLUCYQ7Z3D6 616 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TCAIMQ8N3R3 496 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 APPL2Q8NEU8 664 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 OR6B3Q8NGW1 331 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 VPS37BQ9H9H4 285 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 RSL24D1Q9UHA3 163 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 NR2E3Q9Y5X4 410 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 CFAP99D6REC4 459 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 ELNP15502 786 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 CES1P23141 567 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 SOX5P35711 763 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 ARL2P36404 184 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 ACOT2P49753 483 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TAF6P49848 677 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 VASH1Q7L8A9 365 aaPredicted RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 GPR141Q7Z602 305 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 IFT43Q96FT9 208 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 EEF2KMTQ96G04 330 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 SEMA6BQ9H3T3 888 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TMEM39AQ9NV64 488 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 WDR90Q96KV7 1748 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 A8MXQ7 604 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 H7C0C1 242 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 KLHL41O60662 606 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 FRA10AC1Q70Z53 315 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 FITM2Q8N6M3 262 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 HEXIM2Q96MH2 286 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 OSMRQ99650 979 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 PCDH12Q9NPG4 1184 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 AMFRQ9UKV5 643 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 USP20Q9Y2K6 914 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 WNT7AO00755 349 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TAP1Q03518 808 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 NIPAL4Q0D2K0 466 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 PDK3Q15120 406 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 UGCGQ16739 394 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 SIGIRRQ6IA17 410 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TMEM199Q8N511 208 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 UROC1Q96N76 676 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 FAM124BQ9H5Z6 455 aaPredicted RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 LRRC4Q9HBW1 653 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 SEPT3Q9UH03 358 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 DERAQ9Y315 318 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 SSU72P8A0A1W2PR75 194 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 CCRL2O00421 344 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TRIM49P0CI25 452 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 TRIM49CP0CI26 452 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 KRT3P12035 628 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 CLK3P49761 638 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 KPNA1P52294 538 aaPredicted RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 OLR1P78380 273 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 RFPL4BQ6ZWI9 263 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 MOV10Q9HCE1 1003 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 WDR6Q9NNW5 1121 aaKnown RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 HSFX1Q9UBD0 423 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 CAB39Q9Y376 341 aaPredicted RBP10.1□□□□□ -0.79
USP54-205ENST00000424265 SNAI1O95863 264 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 HLA-DRAP01903 254 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 ZNF18P17022 549 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 STX1BP61266 288 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 EHHADHQ08426 723 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 Q6ZNX1 250 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 HEATR4Q86WZ0 1026 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 DNAJC17Q9NVM6 304 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 STX18Q9P2W9 335 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 MKL2Q9ULH7 1088 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 CNTNAP2Q9UHC6 1331 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 PSMD11O00231 422 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 OR6B1O95007 311 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 RAG1P15918 1043 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 DNAJC3Q13217 504 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 CAPSQ13938 189 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 BCL2A1Q16548 175 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 KHDC1Q4VXA5 237 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 PDZD4Q76G19 769 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 TRIM59Q8IWR1 403 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 DCP1BQ8IZD4 617 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 DEFB118Q96PH6 123 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 NTPCRQ9BSD7 190 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 DDX28Q9NUL7 540 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 PRKAG3Q9UGI9 489 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 ICMTO60725 284 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 AMHP03971 560 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 CYP1A1P04798 512 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 ASGR1P07306 291 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 PABPC1P11940 636 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 ENPP1P22413 925 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 DRAP1Q14919 205 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 KCNA10Q16322 511 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 BTN2A1Q7KYR7 527 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 GIMAP1Q8WWP7 306 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 OLFM1Q99784 485 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 NFKBIZQ9BYH8 718 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 ARMC7Q9H6L4 198 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 NEK6Q9HC98 313 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 APOBEC2Q9Y235 224 aaKnown RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 H7C4K7 107 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 GABBR2O75899 941 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms