RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 RIN2Q8WYP3 895 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 QKIQ96PU8 341 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP54-203ENST00000418501 EMILIN2Q9BXX0 1053 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 HBS1LQ9Y450 684 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 A0A0A0MRY4 1105 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 MAGEB16A2A368 324 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 C5orf60A6NFR6 353 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 PRRG1O14668 218 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 SASH3O75995 380 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 KRT38O76015 456 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 OXCT1P55809 520 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 PARP6Q2NL67 630 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 NAPEPLDQ6IQ20 393 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 KDM7AQ6ZMT4 941 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 HERC6Q8IVU3 1022 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 MCUQ8NE86 351 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 ACSF2Q96CM8 615 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 ZNF512Q96ME7 567 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 SPATA13Q96N96 652 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 LBHD1Q9BQE6 289 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 KCNK9Q9NPC2 374 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 MRPL17Q9NRX2 175 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 RNF19AQ9NV58 838 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 AFF4Q9UHB7 1163 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 NOVA2Q9UNW9 492 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 SMG5Q9UPR3 1016 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 MYH10P35580 1976 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 SMIM23A6NLE4 172 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GCATO75600 419 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ACSL3O95573 720 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 MLNP12872 115 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 PAMP19021 973 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TPSB2P20231 275 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CA4P22748 312 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TKTP29401 623 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 ZNF252P-AS1Q0IIN9 211 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SIX1Q15475 284 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 OASLQ15646 514 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 TPSAB1Q15661 275 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CASC4Q6P4E1 433 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 PID1Q7Z2X4 250 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GSTCDQ8NEC7 633 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SH3GL2Q99962 352 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TKTL2Q9H0I9 626 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SMOC2Q9H3U7 446 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GPATCH2LQ9NWQ4 482 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CALCOCO1Q9P1Z2 691 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 FETUBQ9UGM5 382 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ASB3Q9Y575 518 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 MGAMO43451 1857 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 I3L4J1 428 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TRDMT1O14717 391 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 ALDH3A1P30838 453 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CXCR3P49682 368 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SLC29A2Q14542 456 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CLLU1OSQ5K130 101 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 PSRC1Q6PGN9 363 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 FIBCD1Q8N539 461 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 PAF1Q8N7H5 531 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 MAGEB5Q9BZ81 275 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CDC42EP4Q9H3Q1 356 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 EIF2B3Q9NR50 452 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 ZDHHC18Q9NUE0 388 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GRHL1Q9NZI5 618 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 OR12D3Q9UGF7 316 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ACTL7BQ9Y614 415 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ZSCAN5CA6NGD5 496 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 C3orf70A6NLC5 250 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 PFDN6O15212 129 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 FAM153BP0C7A2 387 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 MYBL2P10244 700 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 FGFR3P22607 806 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 IL1R2P27930 398 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GEMP55040 296 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 IL9RQ01113 521 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TERF2Q15554 542 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 FAM153CQ494X1 144 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TRIM60Q495X7 471 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ZNF557Q8N988 423 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 DQX1Q8TE96 717 aaKnown RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 KCTD15Q96SI1 283 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 PSMC3IPQ9P2W1 217 aaPredicted RBP8.66□□□□□ -1.02
USP54-203ENST00000418501 FAM153AQ9UHL3 310 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 RSPH14Q9UHP6 348 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 DNMT3LQ9UJW3 386 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 NAALADL1Q9UQQ1 740 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 MAD1L1Q9Y6D9 718 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GOLGA6L7A0A1B0GV03 622 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ALOX15BO15296 676 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CNTFP26441 200 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SLC11A1P49279 550 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 GNGT1P63211 74 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 KCNT2Q6UVM3 1135 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 PIK3R5Q8WYR1 880 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 CASD1Q96PB1 797 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 HTATIP2Q9BUP3 242 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 SIK2Q9H0K1 926 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 ZMYM5Q9UJ78 669 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 TLR6Q9Y2C9 796 aa8.66□□□□□ -1.02
USP54-203ENST00000418501 R3HDM2Q9Y2K5 976 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms