RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LTBP3Q9NS15 1303 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 F5H5T6 163 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 SMAPO00193 183 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TULP2O00295 520 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 DNAJC6O75061 913 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 SPAG6O75602 509 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 NOS2P35228 1153 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TBX4P57082 545 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TXNRD3NBQ6F5E7 133 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 PLEKHA7Q6IQ23 1121 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 KIRREL3Q8IZU9 778 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 CARNMT1Q8N4J0 409 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 CLEC4CQ8WTT0 213 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 CRYGNQ8WXF5 182 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 KCNK16Q96T55 309 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 LATS2Q9NRM7 1088 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 LMCD1Q9NZU5 365 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 COQ4Q9Y3A0 265 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 KNL1Q8NG31 2342 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 KIF1CO43896 1103 aaKnown RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 DGKIO75912 1065 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 PSMB4P28070 264 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 FDFT1P37268 417 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 PBX3P40426 434 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 SLC11A2P49281 568 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 RPL10AP62906 217 aaKnown RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 IL1RL1Q01638 556 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 ZNF177Q13360 481 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 ZRANB3Q5FWF4 1079 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 DDX53Q86TM3 631 aaKnown RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TCP10LQ8TDR4 215 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 MAGEB18Q96M61 343 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 WWP1Q9H0M0 922 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 HAO1Q9UJM8 370 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 DSEQ9UL01 958 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 SLC4A7Q9Y6M7 1214 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 BTAF1O14981 1849 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 MSI1O43347 362 aaKnown RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 BGNP21810 368 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 OR1E1P30953 314 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 PGM1P36871 562 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 RAB27AP51159 221 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 GBE1Q04446 702 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 PDAP1Q13442 181 aaKnown RBP11.5□□□□□ -0.57
PTPRF-204ENST00000412568 ACAD11Q709F0 780 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TAS1R3Q7RTX0 852 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 SLC26A11Q86WA9 606 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 DDI1Q8WTU0 396 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 ART4Q93070 314 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 GPR63Q9BZJ6 419 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 TRPM5Q9NZQ8 1165 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 GRID1Q9ULK0 1009 aa11.5□□□□□ -0.57
PTPRF-204ENST00000412568 MTSS1O43312 755 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 CYBBP04839 570 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ERCC2P18074 760 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 CHRM3P20309 590 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 YWHAQP27348 245 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ZCCHC23Q6ZST2 131 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 XYLT1Q86Y38 959 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 PYROXD2Q8N2H3 581 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ULK4Q96C45 1275 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 LRGUKQ96M69 825 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 FIZ1Q96SL8 496 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 NRDE2Q9H7Z3 1164 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ADA2Q9NZK5 511 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-204ENST00000412568 SLC30A1Q9Y6M5 507 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.49□□□□□ -0.57
PTPRF-204ENST00000412568 UBR2Q8IWV8 1755 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 hCG_2014768A0A024R1R8 64 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 MYBPHLA2RUH7 354 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 A8MX80 341 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 MDM4O15151 490 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 LRG1P02750 347 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 URODP06132 367 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 SERPINB9P50453 376 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 LILRA4P59901 499 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 C16orf46Q6P387 395 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 PACS2Q86VP3 889 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 OR52K1Q8NGK4 314 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ZCWPW1Q9H0M4 648 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 HEY2Q9UBP5 337 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 TMEM88BA6NKF7 163 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 AOC2O75106 756 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ANXA9O76027 345 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 VAPBO95292 243 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 SNAI1O95863 264 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ERVK-10P10266 1014 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 SP100P23497 879 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ADRA1DP25100 572 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 CUL3Q13618 768 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 ITIH4Q14624 930 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 BBS12Q6ZW61 710 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 C16orf59Q7L2K0 433 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 NLRP9Q7RTR0 991 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 FAM35AQ86V20 835 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 EXOC3L1Q86VI1 746 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 LRRC52Q8N7C0 313 aa11.49□□□□□ -0.57
PTPRF-204ENST00000412568 CEP70Q8NHQ1 597 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms