RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PCSK1NQ9UHG2 260 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NUDT17P0C025 328 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 FASTKQ14296 549 aaKnown RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DGKDQ16760 1214 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 KCNV1Q6PIU1 500 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 SAMD3Q8N6K7 520 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 FAM120BQ96EK7 910 aaKnown RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NOL11Q9H8H0 719 aaKnown RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 C12orf4Q9NQ89 552 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 RNF112Q9ULX5 631 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 C2CD2LO14523 706 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NOL4O94818 638 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF135P52742 658 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 SLC16A1P53985 500 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 HERC3Q15034 1050 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 FCGR1BQ92637 280 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF75CPQ92670 426 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 TEKT5Q96M29 485 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 PRKD2Q9BZL6 878 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 PI4KBQ9UBF8 816 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DNAJC16Q9Y2G8 782 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DFFAO00273 331 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 FAM228BP0C875 321 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 IREB2P48200 963 aaKnown RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 PSMC5P62195 406 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 MTMR1Q13613 665 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 LIN52Q52LA3 116 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 EIF5AL1Q6IS14 154 aaKnown RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ACAT2Q9BWD1 397 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SP140LQ9H930 580 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 DSEQ9UL01 958 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ACOT9Q9Y305 439 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 KPNA5O15131 536 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 LARGE1O95461 756 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF568Q3ZCX4 644 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SSR3Q9UNL2 185 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 A0A1W2PQ72 361 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 EPN2O95208 641 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 GARTP22102 1010 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SQLEQ14534 574 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 KIZQ2M2Z5 673 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TIGD7Q6NT04 549 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TOR1AIP2Q8NFQ8 470 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 REPS1Q96D71 796 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 APOL2Q9BQE5 337 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 CAB39LQ9H9S4 337 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 FBXO40Q9UH90 709 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 NUP50Q9UKX7 468 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 UNC13BO14795 1591 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TGM3Q08188 693 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 PDK4Q16654 411 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 CHMP1BQ7LBR1 199 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 CDH19Q9H159 772 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TRPM5Q9NZQ8 1165 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ABCG2Q9UNQ0 655 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 MPZL2O60487 215 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 S100A2P29034 98 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 NEK3P51956 506 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 BTN3A2P78410 334 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ST3GAL1Q11201 340 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 FEZF2Q8TBJ5 459 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 RASGRP4Q8TDF6 673 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SLC20A1Q8WUM9 679 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 MED28Q9H204 178 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 PSMD12O00232 456 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 PRMT3O60678 531 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 HELQQ8TDG4 1101 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 KIAA1683Q9H0B3 1180 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 DENND3A2RUS2 1198 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 HS6ST1O60243 411 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TGDSO95455 350 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 HPCAL1P37235 193 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 CEBPAP49715 358 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SLC9A5Q14940 896 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TMEM179Q6ZVK1 233 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ELMOD1Q8N336 334 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 ZCCHC9Q8N567 271 aaKnown RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 MCFD2Q8NI22 146 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 PIWIL2Q8TC59 973 aaKnown RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 HM13Q8TCT9 377 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 C15orf40Q8WUR7 153 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 TBC1D10AQ9BXI6 508 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 GSDMCQ9BYG8 508 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 AGPAT5Q9NUQ2 364 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 FAM49BQ9NUQ9 324 aa13.19□□□□□ -0.3
COL6A3-206ENST00000409809 SRP68Q9UHB9 627 aaKnown RBP13.19□□□□□ -0.3
COL6A3-206ENST00000409809 NPM3O75607 178 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ADAM17P78536 824 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 LACTB2Q53H82 288 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PPM1LQ5SGD2 360 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF671Q8TAW3 534 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 TCF12Q99081 682 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 CELF4Q9BZC1 486 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FADS3Q9Y5Q0 445 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 LOC100506127A0A0U1RQW1 187 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 C2orf81A6NN90 581 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 RPL3P39023 403 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PLCL1Q15111 1095 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PYDC2Q56P42 97 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms