RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 DCLK2Q8N568 766 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 C12orf50Q8NA57 414 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 DEPDC1BQ8WUY9 529 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 EME1Q96AY2 570 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 DHX33Q9H6R0 707 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 C17orf75Q9HAS0 396 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 TXNDC16Q9P2K2 825 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 ARHGAP28Q9P2N2 729 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 AP4B1Q9Y6B7 739 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 TMEM191BP0C7N4 346 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 RGS2P41220 211 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 MAMLD1Q13495 774 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 TAF5Q15542 800 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 DUS1LQ6P1R4 473 aaKnown RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 XRRA1Q6P2D8 792 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 TMIGD2Q96BF3 282 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 APOPT1Q96IL0 206 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 CEP41Q9BYV8 373 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 C20orf27Q9GZN8 174 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 TMEM8AQ9HCN3 771 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 XAB2Q9HCS7 855 aaKnown RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 ADA2Q9NZK5 511 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 SLC24A2Q9UI40 661 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 NUB1Q9Y5A7 615 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 CXorf49A8MYA2 514 aaPredicted RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 TRAFD1O14545 582 aaPredicted RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 ALOX15BO15296 676 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 MAGEB2O15479 319 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 STAM2O75886 525 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 IMPDH2P12268 514 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 SERPINB8P50452 374 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 VCPP55072 806 aaKnown RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 MMRN1Q13201 1228 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 MORF4L2Q15014 288 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 LPCAT2Q7L5N7 544 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 ZBTB8OSQ8IWT0 167 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 SNX31Q8N9S9 440 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 CPT1BQ92523 772 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 APOBEC3GQ9HC16 384 aaKnown RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 CYLDQ9NQC7 956 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 GPATCH2LQ9NWQ4 482 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.35□□□□□ -0.27
PTPRN-202ENST00000409251 POLIQ9UNA4 740 aa13.35□□□□□ -0.27
PTPRN-202ENST00000409251 MYH9P35579 1960 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TTC36A6NLP5 189 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 MCF2LO15068 1137 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 SLC26A4O43511 780 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 ITM2AO43736 263 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 PDGFRBP09619 1106 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 KLRC2P26717 231 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 FLOT2Q14254 428 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 MYLK3Q32MK0 819 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 PPIL6Q8IXY8 311 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 GIPC3Q8TF64 312 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 ZIC5Q96T25 663 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TRPV6Q9H1D0 765 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 Q9H521 79 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 KLK14Q9P0G3 267 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 PCDH10Q9P2E7 1040 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TSC22D4Q9Y3Q8 395 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CNTNAP2Q9UHC6 1331 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 STX16-NPEPL1H3BU86 382 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 NDC80O14777 642 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 SLC25A27O95847 323 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 MT-CO1P00395 513 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 GTF2H1P32780 548 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 ANKRD20A4Q4UJ75 823 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 C16orf87Q6PH81 154 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CPNE9Q8IYJ1 553 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 HELQQ8TDG4 1101 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 FAM172AQ8WUF8 416 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CCDC97Q96F63 343 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 DCUN1D1Q96GG9 259 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 PGLYRP2Q96PD5 576 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 MPHOSPH6Q99547 160 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CXCL16Q9H2A7 254 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TUT1Q9H6E5 874 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TM9SF1O15321 606 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 KCNN4O15554 427 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 LGALS2P05162 132 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 RFC1P35251 1148 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 RPL5P46777 297 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CSE1LP55060 971 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 SESN2P58004 480 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 PSMC1P62191 440 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TAF1CQ15572 869 aaPredicted RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 FAM47CQ5HY64 1035 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 RNASEH2BQ5TBB1 312 aaKnown RBP13.34□□□□□ -0.27
PTPRN-202ENST00000409251 GPR142Q7Z601 462 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 TNS4Q8IZW8 715 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 ALLCQ8N6M5 410 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 FEZF2Q8TBJ5 459 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 GRIN3AQ8TCU5 1115 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 SLITRK1Q96PX8 696 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 IMPG2Q9BZV3 1241 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 SELENONQ9NZV5 590 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 CACNG4Q9UBN1 327 aa13.34□□□□□ -0.27
PTPRN-202ENST00000409251 ADCY6O43306 1168 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 EXTL3O43909 919 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 MSLNQ13421 630 aaPredicted RBP13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms