RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 EZH1Q92800 747 aaPredicted RBP21.64■■□□□ 1.06
CTCF-202ENST00000401394 MARK4Q96L34 752 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 UNKQ9C0B0 810 aaKnown RBP21.64■■□□□ 1.06
CTCF-202ENST00000401394 CAB39LQ9H9S4 337 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 PAK5Q9P286 719 aa21.64■■□□□ 1.06
CTCF-202ENST00000401394 NEMP1O14524 444 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 KRT38O76015 456 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 ITGAXP20702 1163 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 BACE1P56817 501 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 PPP1R13LQ8WUF5 828 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 THAP1Q9NVV9 213 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 ASNSD1Q9NWL6 643 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 TSPAN16Q9UKR8 245 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 TRIP11Q15643 1979 aa21.64■■□□□ 1.05
CTCF-202ENST00000401394 SYNJ2BP-COX16A0A087WUM0 186 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 APOL1O14791 398 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 TNNC2P02585 160 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 ATP6V1B1P15313 513 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 NDST1P52848 882 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 MMEL1Q495T6 779 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 NAPRTQ6XQN6 538 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 TMEM176AQ96HP8 235 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 EBNA1BP2Q99848 306 aaKnown RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 KLC2Q9H0B6 622 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 IFT122Q9HBG6 1241 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 COX16Q9P0S2 106 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 GOLGA8TH3BQL2 631 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 DKC1O60832 514 aaKnown RBP eCLIP21.63■■□□□ 1.05
CTCF-202ENST00000401394 ENDOD1O94919 500 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 CRHR1P34998 444 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 SERPINB5P36952 375 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 BTKQ06187 659 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 TARBP2Q15633 366 aaKnown RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 SLC9B1Q4ZJI4 515 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 KCNT2Q6UVM3 1135 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 ACVR1CQ8NER5 493 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 FNIP1Q8TF40 1166 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 ZFAND2BQ8WV99 257 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 DHX35Q9H5Z1 703 aaKnown RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 WDR55Q9H6Y2 383 aaPredicted RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 APOBEC2Q9Y235 224 aaKnown RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 ARIH2O95376 493 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 PFKMP08237 780 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 ARSAP15289 507 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 MGAT1P26572 445 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 COPAP53621 1224 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 DNAL1Q4LDG9 190 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 MARK2Q7KZI7 788 aaKnown RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 GSDMBQ8TAX9 411 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 COPS5Q92905 334 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 PPP2R3CQ969Q6 453 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 NR1H4Q96RI1 486 aaPredicted RBP21.63■■□□□ 1.05
CTCF-202ENST00000401394 LHX5Q9H2C1 402 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 INPP5FQ9Y2H2 1132 aa21.63■■□□□ 1.05
CTCF-202ENST00000401394 FAM159BA6NKW6 160 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 STX16-NPEPL1H3BU86 382 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 FARP2O94887 1054 aaPredicted RBP21.62■■□□□ 1.05
CTCF-202ENST00000401394 MED21Q13503 144 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 TMCO4Q5TGY1 634 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 ZNF781Q8N8C0 355 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 ANKRD36BP1Q96IX9 119 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 WRNIP1Q96S55 665 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 XPNPEP3Q9NQH7 507 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 DDX18Q9NVP1 670 aaKnown RBP21.62■■□□□ 1.05
CTCF-202ENST00000401394 UBAP1Q9NZ09 502 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 SEPT10Q9P0V9 454 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 AIM2O14862 343 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 MAFGO15525 162 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 NELFEP18615 380 aaKnown RBP21.62■■□□□ 1.05
CTCF-202ENST00000401394 TLR1Q15399 786 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 ATF7IP2Q5U623 682 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 PDPK2PQ6A1A2 396 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 PTAR1Q7Z6K3 402 aaPredicted RBP21.62■■□□□ 1.05
CTCF-202ENST00000401394 FAM156AQ8NDB6 213 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 CNPY3Q9BT09 278 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 PNPLA8Q9NP80 782 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 APPL1Q9UKG1 709 aa21.62■■□□□ 1.05
CTCF-202ENST00000401394 MRPL42Q9Y6G3 142 aaKnown RBP21.62■■□□□ 1.05
CTCF-202ENST00000401394 CILPO75339 1184 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 AOC1P19801 751 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 CYP2F1P24903 491 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 IRF9Q00978 393 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 MAP3K10Q02779 954 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 TTLL12Q14166 644 aaPredicted RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 FAM91A1Q658Y4 838 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 WDR75Q8IWA0 830 aaKnown RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 USP13Q92995 863 aaPredicted RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 OR52B2Q96RD2 323 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 CDT1Q9H211 546 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 H3BNX3 289 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 VAV1P15498 845 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 PKNOX1P55347 436 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 ENPEPQ07075 957 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 TBL3Q12788 808 aaKnown RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 FAM43BQ6ZT52 329 aaPredicted RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 KHSRPQ92945 711 aaKnown RBP eCLIP21.61■■□□□ 1.05
CTCF-202ENST00000401394 TMEM134Q9H6X4 195 aa21.61■■□□□ 1.05
CTCF-202ENST00000401394 MAP3K20Q9NYL2 800 aaKnown RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 HEMK1Q9Y5R4 338 aaPredicted RBP21.61■■□□□ 1.05
CTCF-202ENST00000401394 PPEF2O14830 753 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms