RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 ACADSBP45954 432 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 NOVA1P51513 510 aaKnown RBP13.99□□□□□ -0.17
VCX3A-202ENST00000398729 ZNF445P59923 1031 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 CREB5Q02930 508 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 EXOC3L4Q17RC7 722 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 MPPE1Q53F39 396 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 MSANTD2Q6P1R3 559 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 IRF2BP1Q8IU81 584 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 FAM114A1Q8IWE2 563 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 FAM217AQ8IXS0 508 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 DDI1Q8WTU0 396 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 RLN3Q8WXF3 142 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 ACOX2Q99424 681 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 SLC2A11Q9BYW1 496 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 MIS12Q9H081 205 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 NUP62CLQ9H1M0 184 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 ST7Q9NRC1 585 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 APEX2Q9UBZ4 518 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 DACH1Q9UI36 760 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 FREM2Q5SZK8 3169 aa13.99□□□□□ -0.17
VCX3A-202ENST00000398729 THADAQ6YHU6 1953 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 A0A1W2PQF6 199 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 LNP1A1A4G5 178 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 GTPBP10A4D1E9 387 aaKnown RBP13.98□□□□□ -0.17
VCX3A-202ENST00000398729 GFRA2O00451 464 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 MAP3K13O43283 966 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 SART1O43290 800 aaKnown RBP13.98□□□□□ -0.17
VCX3A-202ENST00000398729 MSI1O43347 362 aaKnown RBP13.98□□□□□ -0.17
VCX3A-202ENST00000398729 SLC9A1P19634 815 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 GNA15P30679 374 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 USP8P40818 1118 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 GPD2P43304 727 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 E2F5Q15329 346 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 MEA1Q16626 185 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 DPCR1Q3MIW9 517 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 SH3PXD2AQ5TCZ1 1133 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 LPCAT2Q7L5N7 544 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 UNC45BQ8IWX7 931 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 CLEC4CQ8WTT0 213 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 UCMAQ8WVF2 138 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 ZNF606Q8WXB4 792 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 P2RY11Q96G91 374 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 GABRG3Q99928 467 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 EDEM2Q9BV94 578 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 THAP9Q9H5L6 903 aa13.98□□□□□ -0.17
VCX3A-202ENST00000398729 NUP205Q92621 2012 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 NPC1O15118 1278 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 THAP12O43422 761 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 NCAM1P13591 858 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 GABRG2P18507 467 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 PON1P27169 355 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 ERCC5P28715 1186 aaPredicted RBP13.97□□□□□ -0.17
VCX3A-202ENST00000398729 RPL34P49207 117 aaKnown RBP13.97□□□□□ -0.17
VCX3A-202ENST00000398729 DHPSP49366 369 aaPredicted RBP13.97□□□□□ -0.17
VCX3A-202ENST00000398729 FOXC1Q12948 553 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 MAN2A1Q16706 1144 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 ARHGAP44Q17R89 818 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 GEN1Q17RS7 908 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 MAP7D1Q3KQU3 841 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 ADGRF1Q5T601 910 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 NUGGCQ68CJ6 796 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 DENND1BQ6P3S1 775 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 GJB7Q6PEY0 223 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 CLEC17AQ6ZS10 378 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 CYP2U1Q7Z449 544 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 ANKS1BQ7Z6G8 1248 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 SCUBE3Q8IX30 993 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 IPO4Q8TEX9 1081 aaKnown RBP13.97□□□□□ -0.17
VCX3A-202ENST00000398729 STK32AQ8WU08 396 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 GATA6Q92908 595 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 FAM149B1Q96BN6 582 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 TRIM62Q9BVG3 475 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 CACNA2D2Q9NY47 1150 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 CALCOCO1Q9P1Z2 691 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 STOML2Q9UJZ1 356 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 PLXND1Q9Y4D7 1925 aa13.97□□□□□ -0.17
VCX3A-202ENST00000398729 PATE3B3GLJ2 98 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 TSPAN3O60637 253 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 ZNF217O75362 1048 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 IGLV3-27P01718 113 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 SLC11A2P49281 568 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 TBX4P57082 545 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 IRX4P78413 519 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 RING1Q06587 406 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 ZNF252P-AS1Q0IIN9 211 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 STARD3Q14849 445 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 EIF4HQ15056 248 aaKnown RBP13.96□□□□□ -0.17
VCX3A-202ENST00000398729 SPDYCQ5MJ68 293 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 SMYD5Q6GMV2 418 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 KIAA1211LQ6NV74 962 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 TMA16Q96EY4 203 aaKnown RBP13.96□□□□□ -0.17
VCX3A-202ENST00000398729 PIWIL1Q96J94 861 aaKnown RBP13.96□□□□□ -0.17
VCX3A-202ENST00000398729 SERPINB11Q96P15 392 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 SCNM1Q9BWG6 230 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 CLEC4EQ9ULY5 219 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 RAD54BQ9Y620 910 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 STON1Q9Y6Q2 735 aa13.96□□□□□ -0.17
VCX3A-202ENST00000398729 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.95□□□□□ -0.18
VCX3A-202ENST00000398729 SRRM3A6NNA2 597 aaPredicted RBP13.95□□□□□ -0.18
VCX3A-202ENST00000398729 BECN2A8MW95 431 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms