RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 UBDO15205 165 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 EFNA5P52803 228 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 RIPPLY1Q0D2K3 151 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SKIV2LQ15477 1246 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 ZMYM1Q5SVZ6 1142 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 JAMLQ86YT9 394 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ADSSL1Q8N142 457 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 MYO1HQ8N1T3 1032 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ZIM3Q96PE6 472 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 CLPBQ9H078 707 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 SLC52A2Q9HAB3 445 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 DNAJC13O75165 2243 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 OR6A2O95222 327 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 RARBP10826 455 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 EIF5AP63241 154 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 PLCL1Q15111 1095 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ANKRD7Q92527 254 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 PUS7LQ9H0K6 701 aaKnown RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 MARCH7Q9H992 704 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 CUEDC1Q9NWM3 386 aaPredicted RBP13.73□□□□□ -0.21
USP49-203ENST00000394253 ST3GAL5Q9UNP4 418 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 ANKRD6Q9Y2G4 727 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 GIT1Q9Y2X7 761 aa13.73□□□□□ -0.21
USP49-203ENST00000394253 XDHP47989 1333 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 TCP10L2B9ZVM9 353 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 GATBO75879 557 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 GRB14Q14449 540 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 PACS1Q6VY07 963 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ZNF677Q86XU0 584 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 CINPQ9BW66 212 aaPredicted RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 PI4KBQ9UBF8 816 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 SDK1Q7Z5N4 2213 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 USP19O94966 1318 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ZNF185O15231 689 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 PRMT3O60678 531 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 RFC5P40937 340 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 UBXN2AP68543 259 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 PKN1Q16512 942 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 LRRC70Q7Z2Q7 622 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 THNSL1Q8IYQ7 743 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 GIPC3Q8TF64 312 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 CNOT7Q9UIV1 285 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 SPEF1Q9Y4P9 236 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 CAMKK1Q8N5S9 505 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 SHCBP1LQ9BZQ2 653 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ASCC3Q8N3C0 2202 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 SLC26A4O43511 780 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 PCNAP12004 261 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 AGKQ53H12 422 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 STK32CQ86UX6 486 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 RNF145Q96MT1 663 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 NMRK2Q9NPI5 230 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 LYVE1Q9Y5Y7 322 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 CPB1P15086 417 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 RAG1P15918 1043 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 HDDC3Q8N4P3 179 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 H3BNX3 289 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 EPN2O95208 641 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ZNF613Q6PF04 617 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 DCAF4Q8WV16 495 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ZNF669Q96BR6 464 aaPredicted RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 C9orf72Q96LT7 481 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 TMEM120AQ9BXJ8 343 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 INTS2Q9H0H0 1204 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 ELL3Q9HB65 397 aaPredicted RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 SQORQ9Y6N5 450 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 DDX39BQ13838 428 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 NR6A1Q15406 480 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 HKDC1Q2TB90 917 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 RIOK2Q9BVS4 552 aaKnown RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 GPAMQ9HCL2 828 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 SLC35C2Q9NQQ7 365 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 ABI2Q9NYB9 513 aaPredicted RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 RPH3AQ9Y2J0 694 aaPredicted RBP13.72□□□□□ -0.21
USP49-203ENST00000394253 NDUFAF1Q9Y375 327 aa13.72□□□□□ -0.21
USP49-203ENST00000394253 CCNKO75909 580 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 STRA8Q7Z7C7 330 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 MTG1Q9BT17 334 aaPredicted RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 THAP1Q9NVV9 213 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 C3orf18Q9UK00 162 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 SHOC2Q9UQ13 582 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 AK5Q9Y6K8 562 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 ADGRF5Q8IZF2 1346 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 NUP214P35658 2090 aaPredicted RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 STOMP27105 288 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 ADSSP30520 456 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 EMILIN2Q9BXX0 1053 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 GANQ9H2C0 597 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 FAM217BQ9NTX9 383 aaPredicted RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 AGO2Q9UKV8 859 aaKnown RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 DRG1Q9Y295 367 aaKnown RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 COPZ1P61923 177 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 GRHL2Q6ISB3 625 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 MAFIPQ8WZ33 124 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 RBM12Q9NTZ6 932 aaKnown RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 ARID1AO14497 2285 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 METTL18O95568 372 aa13.71□□□□□ -0.21
USP49-203ENST00000394253 P4HBP07237 508 aaKnown RBP13.71□□□□□ -0.21
USP49-203ENST00000394253 ALDH1A3P47895 512 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms