RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CIPCQ9C0C6 399 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 CEP44Q9C0F1 390 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 DEFB129Q9H1M3 183 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ALKQ9UM73 1620 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 A0A088AWK7 358 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ABCB1P08183 1280 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 OR56A5P0C7T3 313 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 RARGP13631 454 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF10P21506 573 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 MAPK9P45984 424 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SEC24CP53992 1094 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 AGKQ53H12 422 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SPOCD1Q6ZMY3 1216 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ACTRT1Q8TDG2 376 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TPD52L3Q96J77 140 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TMBIM4Q9HC24 238 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 AXIN2Q9Y2T1 843 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC1A6P48664 564 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 NFIAQ12857 509 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ELAVL2Q12926 359 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 TAF13Q15543 124 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ERO1BQ86YB8 467 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 COLGALT1Q8NBJ5 622 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KIFC1Q9BW19 673 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ECDO95905 644 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 FGFR1P11362 822 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP2F1P24903 491 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 RAP1GAPP47736 663 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 TRIT1Q9H3H1 467 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL41O60662 606 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 SMNDC1O75940 238 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CCR1P32246 355 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PTPAQ15257 358 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 MOXD1Q6UVY6 613 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KRT74Q7RTS7 529 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PTAR1Q7Z6K3 402 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KRT73Q86Y46 540 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KYQ8NBH2 561 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 UXS1Q8NBZ7 420 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 BBS4Q96RK4 519 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PIGUQ9H490 435 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 EVA1BQ9NVM1 165 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PRKAG3Q9UGI9 489 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 TRIM43BA6NCK2 446 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 MED26O95402 600 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PSMB9P28065 219 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ORC1Q13415 861 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CBWD3Q5JTY5 395 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KCNT1Q5JUK3 1230 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CBWD5Q5RIA9 395 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ZDHHC17Q8IUH5 632 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CLEC10AQ8IUN9 316 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 NMRAL1Q9HBL8 299 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL1Q9NR64 748 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 VAV1P15498 845 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 GCLCP48506 637 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 NR2C2P49116 596 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 MGAT5Q09328 741 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 KCNMA1Q12791 1236 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 SH3BP5LQ7L8J4 393 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 NCKAP1Q9Y2A7 1128 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PIK3CDO00329 1044 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CD3EAPO15446 510 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 CORO7P57737 925 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 TRMT5Q32P41 509 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF57Q68EA5 555 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC25A24Q6NUK1 477 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 SPPL2AQ8TCT8 520 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 MAGEC3Q8TD91 643 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 SNRNP27Q8WVK2 155 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 MYLK2Q9H1R3 596 aa13.1□□□□□ -0.31
CCDC88C-204ENST00000389857 PNMA8CA0A1B0GUJ8 204 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 SNPHO15079 494 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ENDOD1O94919 500 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 BCL10O95999 233 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 GZMAP12544 262 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL17Q6TDP4 642 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 PEG10Q86TG7 708 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 GATAD2AQ86YP4 633 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 DENND6AQ8IWF6 608 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 NACC2Q96BF6 587 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ARHGAP28Q9P2N2 729 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TDRKHQ9Y2W6 561 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 CLTCL1P53675 1640 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MYL12BO14950 172 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ASNA1O43681 348 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MTA2O94776 668 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 VTNP04004 478 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ALDH2P05091 517 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 FAM58BPP0C7Q3 252 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 NFE2Q16621 373 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 NDUFAF6Q330K2 333 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 CPNE1Q99829 537 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ROGDIQ9GZN7 287 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TPRKBQ9Y3C4 175 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 LOC102724159A0A0B4J2E5 919 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 EFCAB10A6NFE3 127 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ERI2A8K979 691 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 FOXN3O00409 490 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms