RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 C2CD2LO14523 706 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ZMPSTE24O75844 475 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ARIH2O95376 493 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CHRNA5P30532 468 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 SOAT1P35610 550 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 EN1Q05925 392 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 DDX39BQ13838 428 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 RGS21Q2M5E4 152 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CES3Q6UWW8 571 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CYP2W1Q8TAV3 490 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 MAGEC3Q8TD91 643 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 EPS8L1Q8TE68 723 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 VTA1Q9NP79 307 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 COMMD8Q9NX08 183 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ASB14A6NK59 587 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 DNM1LO00429 736 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 NPTXRO95502 500 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ETS1P14921 441 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ACO1P21399 889 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 PCSK1P29120 753 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CCNHP51946 323 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 GPR162Q16538 588 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ZNF513Q8N8E2 541 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 FNIP1Q8TF40 1166 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 DGCR6LQ9BY27 220 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 IL17RBQ9NRM6 502 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 LIN7AO14910 233 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ADCY6O43306 1168 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ALOX12P18054 663 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CDK7P50613 346 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 CSE1LP55060 971 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 RNF220Q5VTB9 566 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ABHD8Q96I13 439 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ACP6Q9NPH0 428 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 ZC3H4Q9UPT8 1303 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 F8W810 466 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 MGAT1P26572 445 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 SV2CQ496J9 727 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 POLNQ7Z5Q5 900 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 C11orf74Q86VG3 221 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 KATNAL2Q8IYT4 538 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 OTUD5Q96G74 571 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 VPS9D1Q9Y2B5 631 aa20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 TMA7Q9Y2S6 64 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-202ENST00000356786 EDF1O60869 148 aaKnown RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 RAP1GAPP47736 663 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 DGUOKQ16854 277 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TLK2Q86UE8 772 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM120BQ96EK7 910 aaKnown RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 OSBPL7Q9BZF2 842 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 DPP3Q9NY33 737 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 AK5Q9Y6K8 562 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 ERI2A8K979 691 aaKnown RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 ABLIM1O14639 778 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 PIGNO95427 931 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 SERPIND1P05546 499 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 NAMPTP43490 491 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 DPYSL3Q14195 570 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 LACTB2Q53H82 288 aaPredicted RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 PPP4R4Q6NUP7 873 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TRIM63Q969Q1 353 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 GPRASP2Q96D09 838 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 C1orf50Q9BV19 199 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 SLC25A23Q9BV35 468 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 GANQ9H2C0 597 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 LRRC19Q9H756 370 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 PTPRHQ9HD43 1115 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 F8VP50 259 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 GRTP1Q5TC63 336 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 CCDC149Q6ZUS6 474 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TMC7Q7Z402 723 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 CAMK1DQ8IU85 385 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 LNX1Q8TBB1 728 aaPredicted RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 RSPH1Q8WYR4 309 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 LENG1Q96BZ8 264 aaPredicted RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 PLGRKTQ9HBL7 147 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 SAE1Q9UBE0 346 aaPredicted RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 CHKBQ9Y259 395 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 BTNL10A8MVZ5 291 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TAF4O00268 1085 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TRDMT1O14717 391 aaKnown RBP20■□□□□ 0.79
CCDC88B-202ENST00000356786 SYTL3Q4VX76 610 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 FIG4Q92562 907 aa20■□□□□ 0.79
CCDC88B-202ENST00000356786 TPBGLP0DKB5 382 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 TPH1P17752 444 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 NANOGNBQ7Z5D8 188 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 URGCPQ8TCY9 931 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 FOPNLQ96NB1 174 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 NMRAL1Q9HBL8 299 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 ATXN10Q9UBB4 475 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 GOLGA8TH3BQL2 631 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 NBNO60934 754 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 VPS26AO75436 327 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 CHSY1Q86X52 802 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 SLC22A9Q8IVM8 553 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 BTN2A2Q8WVV5 523 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 EME2A4GXA9 379 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 WFS1O76024 890 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 ZBTB7AO95365 584 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 VAV1P15498 845 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms