RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SEC14L4Q9UDX3 406 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 NUP153P49790 1475 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF135P52742 658 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ATP12AP54707 1039 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 GTF2IP78347 998 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 INTS11Q5TA45 600 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ZCCHC8Q6NZY4 707 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 FRMD7Q6ZUT3 714 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 KCNK18Q7Z418 384 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 EPHX4Q8IUS5 362 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ADAM28Q9UKQ2 775 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 ITGA11Q9UKX5 1188 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 SSR3Q9UNL2 185 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 AKR1B1P15121 316 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 TPI1P60174 286 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 CERKLQ49MI3 558 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 MRNIPQ6NTE8 343 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 TCEAL3Q969E4 200 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 EYA1Q99502 592 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 IRX2Q9BZI1 471 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 INO80BQ9C086 356 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 NEK6Q9HC98 313 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 UPB1Q9UBR1 384 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 V9GYQ6 96 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 CHD4Q14839 1912 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 USP32Q8NFA0 1604 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 TFE3P19532 575 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 COMTP21964 271 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PQLC1Q8N2U9 271 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 PPP1R10Q96QC0 940 aaKnown RBP12.9□□□□□ -0.34
COL6A3-203ENST00000353578 FAM49BQ9NUQ9 324 aa12.9□□□□□ -0.34
COL6A3-203ENST00000353578 EIF2S3P41091 472 aaKnown RBP12.9□□□□□ -0.35
COL6A3-203ENST00000353578 TDRKHQ9Y2W6 561 aaKnown RBP12.9□□□□□ -0.35
COL6A3-203ENST00000353578 ZMYM2Q9UBW7 1377 aa12.9□□□□□ -0.35
COL6A3-203ENST00000353578 EMSYQ7Z589 1322 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 NADKO95544 446 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 KLHL24Q6TFL4 600 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF560Q96MR9 790 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 AASSQ9UDR5 926 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RARBP10826 455 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 UMPSP11172 480 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 GRTP1Q5TC63 336 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 EGFLAMQ63HQ2 1017 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 BHLHE22Q8NFJ8 381 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 TFB1MQ8WVM0 346 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PCYOX1Q9UHG3 505 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CHST10O43529 356 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PRKD3O94806 890 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PORP16435 677 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 HOXC9P31274 260 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF235Q14590 738 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ERAP2Q6P179 960 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ENGASEQ8NFI3 743 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 DHX33Q9H6R0 707 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PRMT5O14744 637 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RGL2O15211 777 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CYP2C8P10632 490 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 SLFN13Q68D06 897 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RNF19BQ6ZMZ0 732 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 TNIP3Q96KP6 325 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CFL2Q9Y281 166 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RGSL1A5PLK6 1076 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 INPP4BO15327 924 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 DRD4P21917 467 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 YAP1P46937 504 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 GALK1P51570 392 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 DGKDQ16760 1214 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PYDC2Q56P42 97 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 MEIOBQ8N635 442 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 AGR3Q8TD06 166 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 EEF1AKMT1Q8WVE0 214 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PRKD2Q9BZL6 878 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ADAMTS12P58397 1594 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ATP10AO60312 1499 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 FAM69CQ0P6D2 419 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF268Q14587 947 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 MFSD14BQ5SR56 506 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CYB5RLQ6IPT4 315 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PLEKHF1Q96S99 279 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 SSU72Q9NP77 194 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CD274Q9NZQ7 290 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 NAALADL1Q9UQQ1 740 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 E9PCH4 1651 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 FGFR2P21802 821 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CAPZA2P47755 286 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 NEK3P51956 506 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 FASTKQ14296 549 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 CDO1Q16878 200 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 PROSER1Q86XN7 944 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 ALLCQ8N6M5 410 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RBM4BQ9BQ04 359 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 RBM4Q9BWF3 364 aaKnown RBP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 LRRC40Q9H9A6 602 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 TMEM8AQ9HCN3 771 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 KLHL28Q9NXS3 571 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.89□□□□□ -0.35
COL6A3-203ENST00000353578 GCLMP48507 274 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 NME5P56597 212 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 KRT33BQ14525 404 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms