RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CCT7Q99832 543 aa7□□□□□ -1.29
VPS39-202ENST00000348544 CDCA7Q9BWT1 371 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 OSBPL6Q9BZF3 934 aa7□□□□□ -1.29
VPS39-202ENST00000348544 INO80BQ9C086 356 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 KLC2Q9H0B6 622 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TSPYL2Q9H2G4 693 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 PLGRKTQ9HBL7 147 aa7□□□□□ -1.29
VPS39-202ENST00000348544 AGO4Q9HCK5 861 aaKnown RBP7□□□□□ -1.29
VPS39-202ENST00000348544 PI4KBQ9UBF8 816 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PCSK1NQ9UHG2 260 aa7□□□□□ -1.29
VPS39-202ENST00000348544 AIM2O14862 343 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 EXTL3O43909 919 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 RNASEH2AO75792 299 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 CCNE2O96020 404 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SERPINB2P05120 415 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SERPINE1P05121 402 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 MYL4P12829 197 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 OSBPP22059 807 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PRDX6P30041 224 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 DPP6P42658 865 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PHKA2P46019 1235 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CD151P48509 253 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 MNX1P50219 401 aaPredicted RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 NUDT2P50583 147 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PKNOX1P55347 436 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ENPEPQ07075 957 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CEACAM7Q14002 265 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PDE1CQ14123 709 aaPredicted RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 NOMO1Q15155 1222 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 TKFCQ3LXA3 575 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SLC9B1Q4ZJI4 515 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ZNF394Q53GI3 561 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PIGGQ5H8A4 983 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 RC3H1Q5TC82 1133 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 MEX3CQ5U5Q3 659 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 GPAT2Q6NUI2 795 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 HHIPL2Q6UWX4 724 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ZNF534Q76KX8 674 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CROCCP3Q8IVE0 287 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 C4orf19Q8IY42 314 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 TTLL6Q8N841 843 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CATSPER1Q8NEC5 780 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 NLRP7Q8WX94 980 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 TFAP2BQ92481 460 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CORO1BQ9BR76 489 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 NTPCRQ9BSD7 190 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 RNPEPQ9H4A4 650 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 EHMT1Q9H9B1 1298 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 EBF1Q9UH73 591 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CYTH4Q9UIA0 394 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 DOLKQ9UPQ8 538 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 HEY1Q9Y5J3 304 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PLOD2O00469 737 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ADAM23O75077 832 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 LSM8O95777 96 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 ZBED1O96006 694 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 KRT7P08729 469 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PSMC3P17980 439 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 HOXD12P35452 270 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 MAGEA3P43357 314 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CRKP46108 304 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 HARS2P49590 506 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 CDH15P55291 814 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 MRPS9P82933 396 aaKnown RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 NRF1Q16656 503 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PTPN20Q4JDL3 420 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 RAB6CQ53S08 254 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ITPRIPL1Q6GPH6 555 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PPP1R2P3Q6NXS1 205 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 TIFABQ6ZNK6 161 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 TRIML2Q8N7C3 387 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 KCTD6Q8NC69 237 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 BHLHE22Q8NFJ8 381 aaPredicted RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 ACER1Q8TDN7 264 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 ABHD8Q96I13 439 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SIGLEC10Q96LC7 697 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 OR52B2Q96RD2 323 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 PEBP4Q96S96 227 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CDRT15Q96T59 188 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 CALN1Q9BXU9 219 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 RAB6CQ9H0N0 254 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 COG4Q9H9E3 785 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 OLAHQ9NV23 265 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SLC38A7Q9NVC3 462 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 RBAKQ9NYW8 714 aaPredicted RBP6.99□□□□□ -1.29
VPS39-202ENST00000348544 EPS15L1Q9UBC2 864 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SERPINA10Q9UK55 444 aa6.99□□□□□ -1.29
VPS39-202ENST00000348544 SLX4Q8IY92 1834 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 RBM47A0AV96 593 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 H3BNH8 94 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 STX16-NPEPL1H3BU86 382 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TPP1O14773 563 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CBFA2T3O75081 653 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 STAM2O75886 525 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 APRTP07741 180 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZNF24P17028 368 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 RPL10P27635 214 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 GABRB3P28472 473 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TCF7P36402 384 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 SERPINB5P36952 375 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms