RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MAFBQ9Y5Q3 323 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 C15orf38-AP3S2A0A0A6YYH1 394 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 MYOCOSA0A1B0GUC4 107 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 FAM159BA6NKW6 160 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 TPP1O14773 563 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PRPSAP2O60256 369 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 F7P08709 466 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 TBL3Q12788 808 aaKnown RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 TFDP2Q14188 446 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 LY6KQ17RY6 165 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PPP6R3Q5H9R7 873 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 ARPINQ7Z6K5 226 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 NCAPG2Q86XI2 1143 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 APOBEC3FQ8IUX4 373 aaKnown RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PQLC3Q8N755 202 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 AGR3Q8TD06 166 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PRPF31Q8WWY3 499 aaKnown RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 MKS1Q9NXB0 559 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 SF3B1O75533 1304 aaKnown RBP eCLIP23.07■■□□□ 1.283e-6■■■■■ 48.5
TRIM28-202ENST00000341753 CCDC160A6NGH7 325 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 DCXO43602 365 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 ADCY3O60266 1144 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 IL4RP24394 825 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 L1CAMP32004 1257 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 ABCD1P33897 745 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 CHN2P52757 468 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 TTLL12Q14166 644 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-202ENST00000341753 PPM1JQ5JR12 505 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 PGM2L1Q6PCE3 622 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 UGT2A3Q6UWM9 527 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 ARCQ7LC44 396 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 HIC2Q96JB3 615 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 OXCT2Q9BYC2 517 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-202ENST00000341753 LHX5Q9H2C1 402 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 NGRNQ9NPE2 291 aaKnown RBP23.06■■□□□ 1.28
TRIM28-202ENST00000341753 MED7O43513 233 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 USP2O75604 605 aaPredicted RBP23.06■■□□□ 1.28
TRIM28-202ENST00000341753 KLHL2O95198 593 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 HOXC6P09630 235 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 GRM2Q14416 872 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 ANKRD20A4Q4UJ75 823 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 OR6B2Q6IFH4 312 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 EBNA1BP2Q99848 306 aaKnown RBP23.06■■□□□ 1.28
TRIM28-202ENST00000341753 MAGEB5Q9BZ81 275 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 RNPEPQ9H4A4 650 aa23.06■■□□□ 1.28
TRIM28-202ENST00000341753 H3BNX3 289 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ADCY6O43306 1168 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ALDOAP04075 364 aaKnown RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 R3HDM1Q15032 1099 aaKnown RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 TLR1Q15399 786 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 FAM47CQ5HY64 1035 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 TMEM192Q8IY95 271 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ICA1LQ8NDH6 482 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 PCDH19Q8TAB3 1148 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ACTRT2Q8TDY3 377 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ELOVL4Q9GZR5 314 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 PREBQ9HCU5 417 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ZNF358Q9NW07 568 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 WDR27A2RRH5 827 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 APOL1O14791 398 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 GJB1P08034 283 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 GPD1P21695 349 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 MSX2P35548 267 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ZNF143P52747 638 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 CDK18Q07002 472 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 PDE1CQ14123 709 aaPredicted RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 PCLAFQ15004 111 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 PABPC1LQ4VXU2 614 aaKnown RBP23.05■■□□□ 1.28
TRIM28-202ENST00000341753 LRRC71Q8N4P6 559 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 SLC4A11Q8NBS3 891 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 RAB3IL1Q8TBN0 382 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 SORT1Q99523 831 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 GPRC5DQ9NZD1 345 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 ATXN10Q9UBB4 475 aa23.05■■□□□ 1.28
TRIM28-202ENST00000341753 SOWAHBA6NEL2 793 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 E9PBE3 544 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 KLHL41O60662 606 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 MSCO60682 206 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 ENDOD1O94919 500 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 PGK2P07205 417 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 SMIM18P0DKX4 95 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 GABRB2P47870 512 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 GK3PQ14409 553 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 BSPRYQ5W0U4 402 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 RBM44Q6ZP01 1051 aaKnown RBP23.04■■□□□ 1.28
TRIM28-202ENST00000341753 GADL1Q6ZQY3 521 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 TMC7Q7Z402 723 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 NETO2Q8NC67 525 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 DTNBP1Q96EV8 351 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 MCRS1Q96EZ8 462 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 PGLYRP2Q96PD5 576 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 PSAT1Q9Y617 370 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 RGS7P49802 495 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 AP3M2P53677 418 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 ATXN3P54252 364 aaPredicted RBP23.04■■□□□ 1.28
TRIM28-202ENST00000341753 ACSS2Q9NR19 701 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 LMCD1Q9NZU5 365 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 ITGA11Q9UKX5 1188 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 DTNAQ9Y4J8 743 aa23.04■■□□□ 1.28
TRIM28-202ENST00000341753 HNRNPRO43390 633 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms