RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RNF43Q68DV7 783 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ZPBP2Q6X784 338 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 C4orf50Q6ZRC1 276 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 RNF168Q8IYW5 571 aaPredicted RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 RIBC1Q8N443 379 aaPredicted RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 ARFGAP1Q8N6T3 406 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ICA1LQ8NDH6 482 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 APPL2Q8NEU8 664 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 TFB1MQ8WVM0 346 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 HDAC11Q96DB2 347 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 GPR20Q99678 358 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ARHGEF3Q9NR81 526 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 NMRK1Q9NWW6 199 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 SIX4Q9UIU6 781 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 NDC80O14777 642 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 CRCPO75575 148 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 SNUPNO95149 360 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 SDHAF4Q5VUM1 108 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 FAM156AQ8NDB6 213 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 CATSPER2Q96P56 530 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ST6GALNAC4Q9H4F1 302 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 PCDH18Q9HCL0 1135 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 DNAH12Q6ZR08 3092 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 LSM8O95777 96 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 USP17L7P0C7H9 530 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 CDK16Q00536 496 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ZNF460Q14592 562 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 OASLQ15646 514 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 CCNJLQ8IV13 435 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 PHF21BQ96EK2 531 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 NACA2Q9H009 215 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 SARS2Q9NP81 518 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 CPA4Q9UI42 421 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 MAFBQ9Y5Q3 323 aaPredicted RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 SDK1Q7Z5N4 2213 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ATP6AP2A0A1C7CYW4 349 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 GSC2O15499 205 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ATP6AP2O75787 350 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 APOEP02649 317 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 GM2AP17900 193 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 FGFR3P22607 806 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 GARSP41250 739 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 PRPSAP1Q14558 356 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 RPS6KA2Q15349 733 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 GPR162Q16538 588 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 TFAP2DQ7Z6R9 452 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 C10orf107Q8IVU9 208 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 APBA2Q99767 749 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 SUDS3Q9H7L9 328 aaPredicted RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 KIAA1551Q9HCM1 1747 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 TP73O15350 636 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ITM2AO43736 263 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ENDOD1O94919 500 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 PGM3O95394 542 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 POMCP01189 267 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 EPHA3P29320 983 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 VHLP40337 213 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 CERCAMQ5T4B2 595 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 XRRA1Q6P2D8 792 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 POTEAQ6S8J7 498 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 LRRC74BQ6ZQY2 392 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 RIPOR1Q6ZS17 1223 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 RPS27LQ71UM5 84 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 LCA5Q86VQ0 697 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 SLC35B2Q8TB61 432 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 C10orf82Q8WW14 230 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 UTP4Q969X6 686 aaKnown RBP12.29□□□□□ -0.44
USP1-201ENST00000339950 RHOBTB2Q9BYZ6 727 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 NRDE2Q9H7Z3 1164 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 DCLRE1BQ9H816 532 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 APPL1Q9UKG1 709 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 ARAP2Q8WZ64 1704 aa12.29□□□□□ -0.44
USP1-201ENST00000339950 PIRTP0C851 137 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 ZNF143P52747 638 aaPredicted RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 AP3M2P53677 418 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 TNFAIP2Q03169 654 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 CELF3Q5SZQ8 465 aaKnown RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 PIGZQ86VD9 579 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 NMD3Q96D46 503 aaKnown RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 MFSD3Q96ES6 412 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 B3GALT6Q96L58 329 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 GCNAQ96QF7 691 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 AGAP2Q99490 1192 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 GCOM2Q9BZD3 368 aaPredicted RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 CDHR5Q9HBB8 845 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP1-201ENST00000339950 PSAT1Q9Y617 370 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 SNCAIPQ9Y6H5 919 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 AMHP03971 560 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 SLC1A6P48664 564 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 OCRLQ01968 901 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 WSCD1Q658N2 575 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 HTR3CQ8WXA8 447 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 FSD1LQ9BXM9 530 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 PEX11AO75192 247 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 TBX10O75333 385 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 RALBP11234 206 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms