RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RASA1P20936 1047 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 CACNB3P54284 484 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DLG1Q12959 904 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 DENND5BQ6ZUT9 1274 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 OR8H3Q8N146 312 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 USP7Q93009 1102 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 OSGEPL1Q9H4B0 414 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 CLIC5Q9NZA1 410 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 NCKIPSDQ9NZQ3 722 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 L1RE1Q9UN81 338 aa13.14□□□□□ -0.31
USP47-202ENST00000339865 GNB5O14775 395 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TM9SF1O15321 606 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 FASTKQ14296 549 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 RFX4Q33E94 735 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 FAM220AQ7Z4H9 259 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 FMR1NBQ8N0W7 255 aaPredicted RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 PROX1Q92786 737 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TMEM168Q9H0V1 697 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 NDOR1Q9UHB4 597 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 AGAP1Q9UPQ3 857 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TRAPPC3O43617 180 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 CBWD2Q8IUF1 395 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 DENND6BQ8NEG7 585 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ITFG1Q8TB96 612 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 AIFM2Q9BRQ8 373 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 PUS3Q9BZE2 481 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 FBXO10Q9UK96 956 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 GRIN2BQ13224 1484 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 RAB25P57735 213 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 MSLNQ13421 630 aaPredicted RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 TTLL4Q14679 1199 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TOR3AQ9H497 397 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 WDR35Q9P2L0 1181 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 GNPTGQ9UJJ9 305 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 SNX6Q9UNH7 406 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 BMP10O95393 424 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TOP3BO95985 862 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 MTAPQ13126 283 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TMEM132DQ14C87 1099 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 SLC15A2Q16348 729 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ZNF621Q6ZSS3 439 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TMEM132CQ8N3T6 1108 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 CLPBQ9H078 707 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 KIF1BO60333 1816 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 PP2D1A8MPX8 630 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 CD3EAPO15446 510 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 PRMT3O60678 531 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ULK1O75385 1050 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ADAM17P78536 824 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 MGAT5BQ3V5L5 792 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 FAM171BQ6P995 826 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 KDM7AQ6ZMT4 941 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 RNF149Q8NC42 400 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ING5Q8WYH8 240 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 AP3S1Q92572 193 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 WDCPQ9H6R7 721 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 REEP1Q9H902 201 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TBC1D22BQ9NU19 505 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 PTGFRNQ9P2B2 879 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ZNF180Q9UJW8 692 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TMCO1Q9UM00 188 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 MYH13Q9UKX3 1938 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 A0A0G2JPF8 293 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 HNRNPCL3B7ZW38 293 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 HNRNPCL4P0DMR1 293 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 USP46P62068 366 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 KCNA10Q16322 511 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 C11orf63Q6NUN7 778 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 USP38Q8NB14 1042 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 NOA1Q8NC60 698 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 OR8H1Q8NGG4 311 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 TBCDQ9BTW9 1192 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 RAVER2Q9HCJ3 691 aaKnown RBP13.13□□□□□ -0.31
USP47-202ENST00000339865 SLC12A4Q9UP95 1085 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 NDUFAF1Q9Y375 327 aa13.13□□□□□ -0.31
USP47-202ENST00000339865 ARHGEF33A8MVX0 844 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 POLRMTO00411 1230 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 PSMD14O00487 310 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 PRH1P02810 166 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 FGFR1P11362 822 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ATP2C1P98194 919 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 RNASE12Q5GAN4 147 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 MYO1HQ8N1T3 1032 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 INVSQ9Y283 1065 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ASXL3Q9C0F0 2248 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 CCDC189A1A4V9 331 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 GH2P01242 217 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 RPL19P84098 196 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 ZIK1Q3SY52 487 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 PRMT9Q6P2P2 845 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 RBM43Q6ZSC3 357 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 LENG1Q96BZ8 264 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 TCF7L2Q9NQB0 619 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 CUEDC1Q9NWM3 386 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 CLN6Q9NWW5 311 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ZBTB5O15062 677 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 BGNP21810 368 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 C8orf59Q8N0T1 100 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 KLHL23Q8NBE8 558 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ANTXR1Q9H6X2 564 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms